Query= MSMg01no516_b01.b1 MSMg01no516_b01.b1 CHROMAT_FILE:
MSMg01no516_b01.b1 PHD_FILE: MSMg01no516_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:38 2005
(531 letters)
>mm_chr13_14025463_14026393
Length = 931
Score = 484 bits (250), Expect = e-141
Identities = 256/258 (99%)
Strand = Plus / Plus
Query: 4 ggaattctttccccttcatggtttcagaacaggaaacttattatttagtccttcttgagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttccccttcatggtttcagaacaggaaacttattatttagtccttcttgagc 263
Query: 64 agttgaatactagtttaaacgatctaatagttttgggtgcatatacttttgttacagcac 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 agttgaatactagtttaaacgatctaagagttttgggtgcatatacttttgttacagcac 323
Query: 124 attattagttacatcatgcttaaattcttactagaatttaagaagaagtattttaatcac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attattagttacatcatgcttaaattcttactagaatttaagaagaagtattttaatcac 383
Query: 184 tctgcaaagcagatcttcacactgtagtagattttcagtagattttccgtctctgctgaa 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 tctgcaaagcagatcttcacactgtagtagattttcagtagattttccatctctgctgaa 443
Query: 244 tggcttgcctgggttctt 261
||||||||||||||||||
Sbjct: 444 tggcttgcctgggttctt 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_b01.g1 MSMg01no516_b01.g1 CHROMAT_FILE:
MSMg01no516_b01.g1 PHD_FILE: MSMg01no516_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:38 2005
(671 letters)
>mm_chr13_14171772_14172842
Length = 1071
Score = 1251 bits (647), Expect = 0.0
Identities = 668/681 (98%), Gaps = 11/681 (1%)
Strand = Plus / Minus
Query: 1 ctgggtggaatcggaaaaggatataacatttgaaatgtaaataaagaaaatatccaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 783 ctgggtggaatcggaaaaggatataacatttgaaatgtaaataaagaaaatattc-aaaa 725
Query: 61 aaaggaaaccaactttgaagctaggaagtttttctagaatcaaatccactgtagctcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaaggaaaccaactttgaagctaggaagtttttctagaatcaaatccactgtagctcatt 665
Query: 121 ttaatatatttcaagtgacttctaatttttaagagaccaggtagaatgcttaccactatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttaatatatttcaagtgacttctaatttttaagagaccaggtagaatgcttaccactatg 605
Query: 181 taattatttattagattcaaaatttgtttccaataaaattggcagagttctcaactacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taattatttattagattcaaaatttgtttccaataaaattggcagagttctcaactacat 545
Query: 241 tcactattcaataaagctattgaaagatcaataaatggcagcaacttcatgacttataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcactattcaataaagctattgaaagatcaataaatggcagcaacttcatgacttataat 485
Query: 301 aattaggcagcagggctcagagtactaactagagtgaagctctatgatcagtataatgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aattaggcagcagggctcagagtactaactagagtgaagctctatgatcagtataatgtg 425
Query: 361 tgcctgtggccatatcactcagcatccttgaatctgcttcttcaaccataaaaagagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgcctgtggccatatcactcagcatccttgaatctgcttcttcaaccataaaaagagaaa 365
Query: 421 aatgctactgacctgcctcagagggatgttttaagaaataaccaatgactacagaacttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatgctactgacctgcctcagagggatgttttaagaaataaccaatgactacagaacttt 305
Query: 481 caaagaacaatgtgccatttaaaacattatggaaccagccgggcatggtggcacacgcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caaagaacaatgtgccatttaaaacattatggaaccagccgggcatggtggcacacgcct 245
Query: 541 ttaatcccagcactcgggaggcagaggcaggcggatttctgagtttgaggctagcctggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttaatcccagcactcgggaggcagaggcaggcggatttctgagtttgaggctagcctggt 185
Query: 601 ctacctagtctacaaagtgagttccaggacagtcagagctatacagagaaaccctgtc-- 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 184 ctacctagtctacaaagtgagttccaggacagtcagggctatacagagaaaccctgtctc 125
Query: 659 --------aaaacattatgga 671
|||||||||||||
Sbjct: 124 gaaaaaccaaaacattatgga 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
