Query= MSMg01no516_k03.b1 MSMg01no516_k03.b1 CHROMAT_FILE:
MSMg01no516_k03.b1 PHD_FILE: MSMg01no516_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:26 2005
(520 letters)
>mm_chr13_53150248_53151166
Length = 919
Score = 975 bits (504), Expect = 0.0
Identities = 513/516 (99%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagcctaataaacctttttttttttaactaaagttgcttctggcattttatca 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcctaataaacc-ttttttttttaactaaagttgcttctggcattttatca 263
Query: 65 cagtaatggcacaggggtggggataaaccttgagttgggttgttgtgatgtgaggtttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtaatggcacaggggtggggataaaccttgagttgggttgttgtgatgtgaggtttaa 323
Query: 125 gattctgagtgtactaaaagaactgaagatagagctacacagaagtgtgctaagatgagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattctgagtgtactaaaagaactgaagatagagctacacagaagtgtgctaagatgagt 383
Query: 185 tacagcagcactgttaagagtcaaaagtagggaagcaccagcctgttcatcaagctggca 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 tacagcagcactgttaagagtcaaaagtagggaagcaccagcctgttcatc-agctggca 442
Query: 245 agtgagtaacaaaatggtacgtccttatgaatggcgcattctcagccacaagaaggaaca 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtgagtaacaaaatggtatgtccttatgaatggcgcattctcagccacaagaaggaaca 502
Query: 305 aggcaccaaaatattaaggggctcatttttcctcaacaagacattcgctggcactaggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggcaccaaaatattaaggggctcatttttcctcaacaagacattcgctggcactaggag 562
Query: 365 agcaaaggaaaaacttttgtgaatgctactgaaacttctagctcctgcagaaggacattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agcaaaggaaaaacttttgtgaatgctactgaaacttctagctcctgcagaaggacattc 622
Query: 425 cgtagcctatgaagggcaggcattgccataatcttgtctacatgaccattctagggtggt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cgtagcctatgaagggcaggcattgccataatcttgtctacatgaccattctagggtggt 682
Query: 485 cttttcatcctgccccaaaggagatcgatcgtctct 520
||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttttcatcctgccccaaaggagatcgatcgtctct 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space: 463590
Effective search space used: 463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_k03.g1 MSMg01no516_k03.g1 CHROMAT_FILE:
MSMg01no516_k03.g1 PHD_FILE: MSMg01no516_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:27 2005
(553 letters)
>mm_chr13_53207956_53208910
Length = 955
Score = 1013 bits (524), Expect = 0.0
Identities = 548/556 (98%), Gaps = 4/556 (0%)
Strand = Plus / Minus
Query: 1 tttacctggtggtgggagtggtggggtgatgagcttgtagttgaaaagagagtgcctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tttacctggtggtgggagtggtggggtgatgagcttgtagttgaaaagagagtgcctcca 696
Query: 61 aaagctcacaagtcccctctgtggtacccaggtccccgagatggcagcaagatggggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aaagctcacaagtcccctctgtggtacccaggtccccgagatggcagcaagatggggatt 636
Query: 121 ctgtacatcctggtccccagcattgccatccccctggtcatcgcttgcctgttcttcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctgtacatcctggtccccagcattgccatccccctggtcatcgcttgcctgttcttcctc 576
Query: 181 gtctgcatgtgccgcaacaaacagaaggcttcggcctccaccccacagcgccggcagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtctgcatgtgccgcaacaaacagaaggcttcggcctccaccccacagcgccggcagctg 516
Query: 241 atggcctctcccagccaggacatggagatgccactcatcagccagcacaaacaggtcctc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atggcctcgcccagccaggacatggagatgccactcatcagccagcacaaacaggtcctc 456
Query: 301 cagcccataatgaggcagctctttaggggatggagtgggggagcagggatggaatatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cagcccataatgaggcagctctttaggggatggagtgggggagcagggatggaatatcag 396
Query: 361 ccagcacaaacaagtcctcctga-gggcag-ggagtgatctaggaggcagctctgatagg 418
||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||
Sbjct: 395 ccagcacaaacaagtcctcctgaggggcagagg-gtggtctaggaggcagctctgatagg 337
Query: 419 gtccagctgaagcaccgggtctcagcaggcaagcatacataggccctcttgtgtggccta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtccagctgaagcaccgggtctcagcaggcaagcatacataggccctcttgtgtggccta 277
Query: 479 gcctgagcttagggatttcctccacatattgagtggaggagaggagtgagtcctgat-aa 537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 276 gcctgagcttagggatttcctccacatattgagtagaggagaggagtgagtcctgataaa 217
Query: 538 ataacaaaagagagca 553
| ||||||||||||||
Sbjct: 216 aaaacaaaagagagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
