TTTTNTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCAGAAACATCTTTCCCAAAACAATATGAAATAAG
GCAGGAACTGATATTTGTTCAATTAAAAGAAAAAAATTCACTTGATTTTC
CCAGATGAAGGACTACACTAACAGTTCCCACCATGCACTCTGCTAACACA
GGTGAAGGACTACCCTGACAGTTCCCACCATGCACCCTGCTAACACAGGT
GAAGGACTACCCTGACAGTTCCTACCATGCACCCTGCTAACTTTGATGAG
AACACCTCTCCGTCCTCGGAAATCTCACTGCTAAGCCTGCTTACTTGCTA
GATTTTCATGGTATCTTGACACAGGGTCTTTCCATGTGGTCCAGGATGGT
CTAGAAGTAGTCAGAAAACAAGATTCTCCCTCAGCCTTTCAGTGCTGGGA
TTATAGGTGAGATTTACTGCTTCAATTTTCTAAAGTATAGCTTTATCAAA
TCGCAACAAAGCAACAAATCTCCTAAAAACAGAAGTGGAGATTATATATA
TACACACACACATATGTATGTATATATGTATACACACACACACATAAAAG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATATGTATATG
NANANCNCGGGCACGGTCTTCTCTCACAACNGGCATTTCCCCGCCTGTAA
CGTGGTAATGCTTANAACATCTGTGCATCCCTGGGTCGTTGTGGAGGACT
GAAATAACATTTAAGGATCACCCAA

AAAAATTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTACTGAGAAAAG
TTAAACCTGAGCTGTGAGTATAAAACTCATCTCCTGAACCATTAAACTAG
CATGTGGTGGGACACATTAGACAGACAGGGACAAGATAGGTATCTGTTTC
CCTGAGAGAAATGCTCTGAAGTGACGGAAGCTGAGTCCATGAGCACAAGG
TCATTCTTCATTCAAGAGCACAGTCCATGAGCATGGAGTAGTCCTCTCTC
AGGAGCATAGTCCATAGTCCATGAGGAGTAGTCTTCCCTCAGGAGCACAG
TCCATGAGCGTGGAGTAGTCCTCTCTCAGGAGCATAGTCCATAGTCCATG
AGGAGTAGTCTTCCCTCAGGAGCACAGTCCATGAACATGGAGTAGTCCTC
CCTCAGGAGCACAGTCTGTGAGCATGGAGTAGTCCTCACTCAGGAGCACA
GTCAGTGAGCATGGAGTAGTCCTCCCTCAGGAGCACAGTCTGTGAGCATG
GAGTAGTCCTCACTCAGGAGCACAGTCAGTGAGCATGGAGTAGTCCTCCC
TCAGGAGCACAGTCTGTGAGCATGGAGTAGTCCTCACTCTGGAGCACAGT
CAGTGAGCATGGAGTAGTCCTCACTCTGGAGCACAGTCTATGAGCATGGA
GTAGTTCTCACTCTGGAGCACAGCTCATGAGCATGGAGTAGTCCTCCTCA
NGATCACAGTCCATGTGCT

Query= MSMg01no516_p24.b1 MSMg01no516_p24.b1 CHROMAT_FILE:
MSMg01no516_p24.b1 PHD_FILE: MSMg01no516_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:56 2005
         (534 letters)



>mm_chr13_29421321_29422256
          Length = 936

 Score =  967 bits (500), Expect = 0.0
 Identities = 526/540 (97%), Gaps = 10/540 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagaaacatctttcccaaaacaatatgaaataaggcaggaactgatatttgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagaaacatctttcccaaaacaatatgaaataaggcaggaactgatatttgtt 264

                                                                       
Query: 65  caattaaaag--aaaaaaattcacttgattttcccagatgaaggactacactaacagttc 122
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattaaaagaaaaaaaaattcacttgattttcccagatgaaggactacactaacagttc 324

                                                                       
Query: 123 ccaccatgcactctgctaacacaggtgaaggactaccctgacagttcccaccatgcaccc 182
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaccatgcaccctgctaacacaggtgaaggactaccctgacagttcccaccatgcaccc 384

                                                                       
Query: 183 tgctaacacaggtgaaggactaccctgacagttcctaccatgcaccctgctaactttgat 242
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 tgctaacacaggtgaaggactaccctgacagttcctaccacgcaccctgctaactttgat 444

                                                                       
Query: 243 gagaacacctctccgtcctcggaaatctcactgctaagcctgcttacttgctagattttc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaacacctctccgtcctcggaaatctcactgctaagcctgcttacttgctagattttc 504

                                                                       
Query: 303 atggtatcttgacacagggtctttccatgtggtccaggatggtctagaagtagtcagaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 atggtatcttgacacagggtctttccatgtggtccaggatggtctaggagtagtcagaaa 564

                                                                       
Query: 363 acaagattctccctcagcctttcagtgctgggattataggtgagatttactgcttcaatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaagattctccctcagcctttcagtgctgggattataggtgagatttactgcttcaatt 624

                                                                       
Query: 423 ttctaaagtatagctttatcaaatcgcaacaaagcaacaaatctcctaaaaacagaagtg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctaaagtatagctttatcaaatcgcaacaaagcaacaaatctcctaaaaacagaagtg 684

                                                                       
Query: 483 gagattatatatatacacacacacata--------tgtatgtatatatgtatacacacac 534
           ||||||||||||||||||||||||| |        |||||||||||||||||||||||||
Sbjct: 685 gagattatatatatacacacacacacacacacacatgtatgtatatatgtatacacacac 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 936
Length adjustment: 10
Effective length of query: 524
Effective length of database: 926
Effective search space:   485224
Effective search space used:   485224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)