BAC Information

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BAC

Clone NameMSMg01-517D13
Chromosome13 (Build37)
Map Location 55,232,633 - 55,233,266
singlet/doubletsinglet
Overlap geneZfp346
Upstream geneHrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707
Downstream geneFgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517D13.T7 (MSMg01no517_d13.b1)MSMg01-517D13.TJ (MSMg01no517_d13.g1)
ACCAG589026AG589027
length759752
length of high quality
(start - end)		632 (36 - 667)615 (67 - 681)
definitionCHROMAT_FILE: MSMg01no517_d13.b1 PHD_FILE: MSMg01no517_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:14 2005CHROMAT_FILE: MSMg01no517_d13.g1 PHD_FILE: MSMg01no517_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGT
TAACCTGGACTCTACTTGCAAATCTGAGTGAAAACCGCAAACTCGCCAGG
CAGTGGTGGCGCACGCCTTTAGTCCCAGCACTCAGGAGGCAGAGGCAGGC
GGATGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG
GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAGGAAGG
AAGGAAGAAAGAAAGAAAGAAAAAGTCGCAAACTCAGATGTACTGGGCTA
TGCTCAGCATCCCCGCACTACGAAGGCAGAGCTGTAGCTCCCTGGGCTCA
CTGGGCAGCCAGTGCAGCCTGCTTAGCAAGTGCTAGACCAGTGAGACAGA
CCTTGTCTCAGAAGGACATAAGCACCTAAGCAATAACACCTTAGGGCCAT
CCTCAGACCTACACACATGCGCGCGCACACACACAAGAAATCATGTTTGA
TGAAGAGTAAATGCATCTCAAGATCATGTTAAGCAAGACAAGCCAAAGTC
AGAGAAACGCATAAAAGTCATGGCTTTCTCCCCTCCTTTGCAGATCCTAA
ATGTCTTTTCTTTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACG
CTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTACAG
ATGGTTGTGAGCCACCATATGATTGCTGGGATTTGAACTCAAGACCTTCG
GAAGAGCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGTCCAGCCATGGTTACATAGTGAGACTCTGTC
TCAAATTAAAATAAAAGAAAGATTACCAGGTATGGTGGCACACAGGAAGG
AGGAAGAGGAAAGCAGATCTCTGTGAGTTTAAGGCCAGCCTAGTCTACAA
AGTGATTCTAAGACAGCCAGGGCTGTTATACAGAGGAGAGCAGAAGAAAA
AAGTTTAAGGACTAGAAAATTTTTATCCTGACAGTCATTATGTTAAATAA
AAGAAACTTGTTACAAAAGAACTAACTATATGATTTTATTTATATGAAGT
TCCTTCAAAGCCAGGCACAGTGGCTCATGCATTAATTCCAGCAGAGGCAG
GTGGGTTCACAGCTAGTCTGGTTTATACAATGAGAAAAACAAAAACTGAA
ACTGTGGGTTGAGAGATCGCTCAGTGGTGTTGTTAACAGCACTGATTCTG
CTTCTACAGGACTGGGGTTTAAATCCCAGCATCCACAAGGCAGCTCACAA
CTGCCTGTAATTCCAATTCCAGGAGATCTGACACCCTAACACAGACATAT
ACACAAGCAAAACACCAATGTTCACAAAATTAAAAAAACATGTCCAACTA
CCACATGCCGTTTCTTTCTCTCTCTTTTTCAAGACAGGGCTTCTCTGTGT
AGTTCTGGCTGTTCTGGACTCACTTTTCTTACTTAGTTTGTCCTATTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_d13.b1 MSMg01no517_d13.b1 CHROMAT_FILE:
MSMg01no517_d13.b1 PHD_FILE: MSMg01no517_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:14 2005
         (632 letters)



>mm_chr13_55232434_55233464
          Length = 1031

 Score = 1158 bits (599), Expect = 0.0
 Identities = 624/635 (98%), Gaps = 7/635 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaggttaacctggactctacttgcaaatctgagtgaaaaccgcaaactcgcca 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcaaggtcaacctggactctacttgcaaatctgagtgaaaaccgcaaactcgcca 259

                                                                       
Query: 64  ggcagtggtggcgcacgcctttagtcccagcactcaggaggcagaggcaggcggatggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggcagtggtggcgcacgcctttagtcccagcactcaggaggcagaggcaggcggatggat 319

                                                                       
Query: 124 ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacaca 379

                                                                       
Query: 184 gagaaaccctgtctcgaaaaaccaaaggaaggaaggaagaaagaaagaaagaaaaagtcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagaaaccctgtctcgaaaaaccaaaggaaggaaggaagaaagaaagaaagaaaaagtcg 439

                                                                       
Query: 244 caaactcagatgtactgggctatgctcagcatccccgcactacgaaggcagagctgtagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaactcagatgtactgggctatgctcagcatccccgcactacgaaggcagagctgtagc 499

                                                                       
Query: 304 tccctgggctcactgggcagccagtgcagcctgcttagcaagtgctagaccagtgagaca 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 500 tccctgggctcactgggcagccagtgcagcctgcttagcaagtgcaagaccagtgaggca 559

                                                                       
Query: 364 gaccttgtctcagaaggacataagcacctaagcaataacaccttagggccatcctcagac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaccttgtctcagaaggacataagcacctaagcaataacaccttagggccatcctcagac 619

                                                                       
Query: 424 ctacacacatgcgcgcgcac----acacacaagaaatcatgtttgatgaagagtaaatgc 479
           |||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctacacacatgcgcgcgcgcgcgcacacacaagaaatcatgtttgatgaagagtaaatgc 679

                                                                       
Query: 480 atctcaagatcatgttaagcaagacaagccaaagtcagagaaacgcataaaagtcatggc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 atctcaagatcatgttaagcaagacaagccaaagtcagagaaacgcataaa-gtcatggc 738

                                                                       
Query: 540 tttctcccctcctttgcagatcctaaatgtcttttctttt--tttttttttaagatttat 597
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 739 tttctcccctcctttgcagatcctaaatgtcttttcttttcttttttttttaagatttat 798

                                              
Query: 598 ttattatatgtaagtacgctgtagctgtcttcaga 632
           |||||||||||||||||||||||||||||||||||
Sbjct: 799 ttattatatgtaagtacgctgtagctgtcttcaga 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space:   635062
Effective search space used:   635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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