AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTTGCCTTTTAGATTTCTGTTTTACTCAATTCCATCAGTTAAAATCT
GTCTAAGTCTCAATGTAAAGTTTTGACATCTTGCCAAAAATCAGTGGCCG
ACATGCAGTGATAATCATTTCTGGGTTCTTAAACATACTATATGTTTGTC
TTTATTTCAAAGATATTCTTCTAAATGTGACATAGTATTCAATTCTACAT
AAGCATAAACATTTACATAGTAATAGGGTATCATCTAATCTTTTGATAAT
ATTTAAATCAGAAAAAAATAATATTCAGTAATATATGTTTAACATACACA
TAAAATGTATATAGTACATTCTGTGTCTTCAAAAATTGATTAGTTTTTAT
AGAATAAACATTCAAACTATAACATAGAGGTTTAAAAACTATATTTTAAA
ACTATACTCATCCTCCTATACAACAGCACATTAGACTTCCTTTCCTACAC
CAACTATTCCTTGGTGTGCATTATTAGTCCTTCACTGTCTCCCTCCCCCA
TACTCTCTCAGCTTCTATAATGGCCATTATACTCTTAATTTCTTCCAAAG
CATCATTTTTACAAATTTTACAAATTTGTGAATGGCTGCTGCCATATAAT
GCTTACCATTTTTGTTTTGACATGTAGTTCTAGTAATATAATTATTCCTA
GGTTCATTTATGTGGTAGCAAATGGGCAACAAAGCCATTTTAGATGAATA
GCTTTCTTTT

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCATAAGTGGGTATTAGCCCAGAAACTCAG
AATATCCAAGATACAATTCACAGACCACATGAAGTTCCAGAAGAAGGAGG
ACCACAGTGTGAATACTTCGGTCCTTCTTAGAAGAACAAAATACTCACAG
GAGAAAATATGGAAATAAAGTGTAGAGCAGAGACTAAAGGAGAGGCCACC
GAGAGACTGTCCTACCTGGGAATTCATGCCATATACAGTTACCAAACCCA
GACATTATGTAGATGCCAAGAAGCACATGCTAAAAGGAGCCTGATATGGC
TATCTCCTGAGAGGCCCTGCCAGAGCCTTACAAATACATAGGCAGATGTT
GGCAGCCAACAATTGAACTGAGAGCAGGGTCCCAATAGAGGAGTTAGAGA
AGGGACTGAAGGGGAGTTGTAGGGGTTTGCAACCCCTTANGAAGAACAAC
AATGTCAACCAACCCAACCCCCTAGAACTTCCAGGGACTAACCCATCAAC
AAAGGAGTACACATGTCTACAGCTGCATATGTAATAGTGGGTGGCCTTGT
CATGCATCAGTGCAAGGAGAGGTCCTTGGTCCTATGAAGACTTGATGGAT
AACCCATTATAGGAGAATCTCGGCGGCCTAGTGGGTTTGGGTGGGTGATT
TTAAGCTCCTTTCTGGGTCCGTTCTTTTCTTTCCTTTTTCTTCTTTTCTT
TTTGGCTCCTCTTTG

Query= MSMg01no517_p05.b1 MSMg01no517_p05.b1 CHROMAT_FILE:
MSMg01no517_p05.b1 PHD_FILE: MSMg01no517_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:12 2005
         (639 letters)



>mm_chr13_4255067_4256105
          Length = 1039

 Score = 1220 bits (631), Expect = 0.0
 Identities = 634/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttttgccttttagatttctgttttactcaattccatcagttaaaatctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttttgccttttagatttctgttttactcaattccatcagttaaaatctgt 264

                                                                       
Query: 65  ctaagtctcaatgtaaagttttgacatcttgccaaaaatcagtggccgacatgcagtgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaagtctcaatgtaaagttttgacatcttgccaaaaatcagtggccgacatgcagtgat 324

                                                                       
Query: 125 aatcatttctgggttcttaaacatactatatgtttgtctttatttcaaagatattcttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcatttctgggttcttaaacatactatatgtttgtctttatttcaaagatattcttct 384

                                                                       
Query: 185 aaatgtgacatagtattcaattctacataagcataaacatttacatagtaatagggtatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgtgacatagtattcaattctacataagcataaacatttacatagtaatagggtatc 444

                                                                       
Query: 245 atctaatcttttgataatatttaaatcagaaaaaaataatattcagtaatatatgtttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atctaatcttttgataatatttaaatcagaaaaaaataatattcagtaatatatgtttaa 504

                                                                       
Query: 305 catacacataaaatgtatatagtacattctgtgtcttcaaaaattgattagtttttatag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catacacataaaatgtatatagtacattctgtgtcttcaaaaattgattagtttttatag 564

                                                                       
Query: 365 aataaacattcaaactataacatagaggtttaaaaactatattttaaaactatactcatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aataaacattcaaactataacatagaggtttaaaaactatattttaaaactatactcatc 624

                                                                       
Query: 425 ctcctatacaacagcacattagacttcctttcctacaccaactattccttggtgtgcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcctatacaacagcacattagacttcctttcctacaccaactattccttggtgtgcatt 684

                                                                       
Query: 485 attagtccttcactgtctccctcccccatactctctcagcttctataatggccattatac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attagtccttcactgtctccctcccccatactctctcagcttctataatggccattatac 744

                                                                       
Query: 545 tcttaatttcttccaaagcatcatttttacaaattttacaaatttgtgaatggctgctgc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcttaatttcttccaaagcatcatttttacaaattttacaaatttgtgaatggctgctgc 804

                                              
Query: 605 catataatgcttaccatttttgttttgacatgtag 639
           | |||||||||||||||||||||||||||||||||
Sbjct: 805 cttataatgcttaccatttttgttttgacatgtag 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)