Query= MSMg01no518_a20.b1 MSMg01no518_a20.b1 CHROMAT_FILE:
MSMg01no518_a20.b1 PHD_FILE: MSMg01no518_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:21 2005
(664 letters)
>mm_chr13_63614398_63615460
Length = 1063
Score = 1152 bits (596), Expect = 0.0
Identities = 652/676 (96%), Gaps = 12/676 (1%)
Strand = Plus / Plus
Query: 1 cttcaccactaaactgtgcctccctgtaacaatgctggcactgccccggttcagtccaca 60
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 188 cttcaccactaaactatgcctccttgtaacaatgctggcactgccccggttcagtccaca 247
Query: 61 agattaaaaggaaacacatcttacagtctacaaagaatggcgcgctggtggtttcctgtg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agattaaaaggaaacacatcctacagtctacaaagaatggcgcgctggtggtttcctgtg 307
Query: 121 atttga-cccgacgtgtacacttttttcttgcaccccatctgtctactagatctgctgct 179
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atttgaccccggcgtgtacacttttttcttgcaccccatctgtctactagatctgctgct 367
Query: 180 cagagtacacaagagcctgccccgaacctcctggcccactgccacaggacaaat-aa--- 235
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 368 cagagtacacaagagcctgctccgaacctcctggcccactgccacaggacaaatgaatct 427
Query: 236 -----ac--ccccccccccattgccaaccccccaggtgactcacagtggaccgggcaaag 288
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tccccaccgcccccccccccttgccaaccccccaggtgactcacagtggaccgggcaaag 487
Query: 289 acagggttttctgtggcttctacaatcacttggtgggcagggcctccggcgccctgctgt 348
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 acagggttttctgtggcttccacaatcacttggtgggcagggcctccggcaccctgctgt 547
Query: 349 gcttcgtattgcctgagctcctcactgatgccagacaccgtggtctgagagctgtactcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcttcgtattgcctgagctcctcactgatgccagacaccgtggtctgagagctgtactcc 607
Query: 409 gagtcggaggaatcagacccattgttcgtgtgaccaggaggcacagcaaaccggacgaca 468
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 608 gagtcggaggaatcagacccattgttcgtgtgaccaggaggcacggcaaaccggacgaca 667
Query: 469 cttgggggcggctcaggcgaaggagtgggcagtcggtttaggccattggctggagacacc 528
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cttggaggcggctcaggcgaaggagtgggcagtcggtttaggccattggctggagacacc 727
Query: 529 tgttgaaggaggtttccaattaaaaatgttacgtttgttgacccacaggtcactttcaaa 588
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 728 tgttgaaggaggtttccaattaaaaatgttacgtttgttgacccgcaggtcactttcaaa 787
Query: 589 gttcaaagcccaggattattggcctctgtgacctcgcaggggaaccccatacattaaact 648
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 788 gttcaaagcccaggattattggcctctgtgacctcgtaggggaaccccatacattaaact 847
Query: 649 gtatttacttcccgtc 664
||||||||||||||||
Sbjct: 848 gtatttacttcccgtc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_a20.g1 MSMg01no518_a20.g1 CHROMAT_FILE:
MSMg01no518_a20.g1 PHD_FILE: MSMg01no518_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:21 2005
(594 letters)
>mm_chr13_63751680_63752673
Length = 994
Score = 1133 bits (586), Expect = 0.0
Identities = 593/596 (99%), Gaps = 3/596 (0%)
Strand = Plus / Minus
Query: 1 ctttcacactaggcaacggggcaagttttaccatgagaaacaggagagaaactttaagtt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctttcacactaggcaac-gggcaagttttaccatgagaaacaggagagaaactttaagtt 729
Query: 61 catggtgtcctgagagtagtggctttaaggaagagacaccaccgccaggcatggtgacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 catggtgtcctgagagtagtggctttaaggaagagacaccaccgccaggcatggtgacac 669
Query: 121 atacctaaaatcccagcacttgagatgtggcaacaaaaaagatcaggagttcaaggccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atacctaaaatcccagcacttgagatgtggcaacaaaaaagatcaggagttcaaggccat 609
Query: 181 cttcaactacatagcaagtctgagggaagcggggctgctagagaccccgtcactaaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttcaactacatagcaagtctgagggaagcggggctgctagagaccccgtcactaaaata 549
Query: 241 aagtacaactaaaaatttaaaaagggagagttatatcagaaaagttgtgtctctgtctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aagtacaactaaaaatttaaaaagggagagttatatcagaaaagttgtgtctctgtctcc 489
Query: 301 cctgtctccctccactcccccacaccaagcagacagccataagcaa--caaggtacgagc 358
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 488 cctgtctccctccactcccccacaccaagcagacagccataagcaagccaaggtacgagc 429
Query: 359 cctcacccaggagcagaatcaactacttgaccttgaacttgccagccgccttagaaccat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctcacccaggagcagaatcaactacttgaccttgaacttgccagccgccttagaaccat 369
Query: 419 gaagaatagctgctgttgtttaagccccatgcctggtccatctgtgctgtgtgcttgtgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaagaatagctgctgttgtttaagccccatgcctggtccatctgtgctgtgtgcttgtgg 309
Query: 479 cagaacccaggcatgaaaaggaaattatcatggaccttaaagatgacaatttaatttgat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagaacccaggcatgaaaaggaaattatcatggaccttaaagatgacaatttaatttgat 249
Query: 539 tcaggggccgttagaactcaccgatggcagattaatcacaaacatctatctccatt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcaggggccgttagaactcaccgatggcagattaatcacaaacatctatctccatt 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
