Query= MSMg01no518_i24.b1 MSMg01no518_i24.b1 CHROMAT_FILE:
MSMg01no518_i24.b1 PHD_FILE: MSMg01no518_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:59 2005
(672 letters)
>mm_chr13_57794872_57795944
Length = 1073
Score = 1247 bits (645), Expect = 0.0
Identities = 663/669 (99%), Gaps = 1/669 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatggatgcagagtaacccattccctgcctgtgtgtaacaggggagtctatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctcatggatgcagagtaacccattccctgcctgtgtgtaacaggggagtctatct 814
Query: 65 ggtgacctccacttcaggctccctgctgtggctcagctcagctgtgaggtaccctgacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ggtgacctccacttcaggctccctgctgtggctcagctcagctgtgaggtaccctgacct 754
Query: 125 gatgatgctctatgctcagtcacatcgatgggtgcttgtcctccaaggatctagtaacta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gatgatgctctatgctcagtcacatcgatgggtgcttgtcctccaaggatctagtaacta 694
Query: 185 tcagagttcctccctcccagggcttgtagacatgtagatgccatggaaggaaggcacatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcagagttcctccctcccagggcttgtagacatgtagatgccatggaaggaaggcacatc 634
Query: 245 tgctttgttaaggcacatgagagaagagaatatataaagactagtgcctatgcctcttgg 304
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 633 tgctttgttaagacacatgagagaagagaatatataaagactagtgtctatgcctcttgg 574
Query: 305 atggataagtgataactccttttgctctgatggccacacagggactctgagtcccaaggg 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atggataagtgataactcctcttgctctgatggccacacagggactctgagtcccaaggg 514
Query: 365 aagcacagccttcaaccttaggcaaaaactccagacagggctttggccattattctgaac 424
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 513 aagcacagccttcaagcttaggcaaaaactccagacagggctttggccattgttctgaac 454
Query: 425 agagctctgaccctctgtgcatgcttggaaccttatgtttgctgagatgagccctctccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agagctctgaccctctgtgcatgcttggaaccttatgtttgctgagatgagccctctccc 394
Query: 485 catacctcatgatgctcagggggtacagatgggagtcctctgtatggctgctttggctat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catacctcatgatgctcagggggtacagatgggagtcctctgtatggctgctttggctat 334
Query: 545 ttatattcagagccaggggagggtggtaagtcgagggtagccttccttt-aaatatcagc 603
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 333 ttatattcagagccaggggagggtggtaagtcgagggtagccttcctttaaaatatcagc 274
Query: 604 cccagcagatgtcatcaactgccttgtgtgctgcttaacagaaatggatagttactgatg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cccagcagatgtcatcaactgccttgtgtgctgcttaacagaaatggatagttactgatg 214
Query: 664 gcactggca 672
|||||||||
Sbjct: 213 gcactggca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space: 703706
Effective search space used: 703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_i24.g1 MSMg01no518_i24.g1 CHROMAT_FILE:
MSMg01no518_i24.g1 PHD_FILE: MSMg01no518_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:00 2005
(612 letters)
>mm_chr13_57645986_57646997
Length = 1012
Score = 905 bits (468), Expect = 0.0
Identities = 549/612 (89%), Gaps = 58/612 (9%)
Strand = Plus / Plus
Query: 3 cctcccaacacggtgacgcagggggcagaatcctacctggtccttctctcctgaaccagg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cctcccaacacggtgacgcagggggcagaatcctacctggtccttctctcctgaaccagg 262
Query: 63 ttttgtcttgaattttgcaagattaaacaatcaaaaatgacctgtgcgtcacaggtagga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttgtcttgaattttgcaagattaaacaatcaaaaatgacctgtgcgtcacaggtagga 322
Query: 123 ctttctatcagtgggtttaggtgcctccaggacatcgc--gcacttgggtcagttcaggc 180
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 323 ctttctatcagtgggtttaggtgcctccaggaca-c-catgcacttgggtcagttcaggc 380
Query: 181 acaggcagctcctgcaaggctacaaacagacacatggtggcattggcattcagaagaaac 240
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggcagcttctgcaaggccacaaacagacacatggtggcattggcattcagaagaaac 440
Query: 241 aggtcatcttctctggcatgagggggacaaggggatttactgaggagacagcactcaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtcatcttctctggcatgagggggacaaggggatttactgaggagacagcactcaggc 500
Query: 301 tgagccttatggctgggattccaggttggtggctccttttactgataggaggctgggtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagccttatggctgggattccaggttggtggctccttttactgataggaggctgggtct 560
Query: 361 gttctctcccatcactgtgaattaagtgcagagacctggggagttggctggggatgctgc 420
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gttctcttccatcactgtgaattaagtgcagagacctggggagttgactggggatgctgc 620
Query: 421 cgagtgccagttgcactttgtattcgcagagccatgggttcaaactctggcacaaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgagtgccagttgcactttgtattcgcagagccatgggttcaaactctggcacaaataaa 680
Query: 481 taaatgtgaaaagatcatcataaaaaggtgcatgctctgtcctaccttgatcagccatcc 540
||||||||||
Sbjct: 681 taaatgtgaa-------------------------------------------------- 690
Query: 541 catatagcatcagtcggggtatgcattgtttctctctcaagggggcccaaatgactaact 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 691 ----tagcatcagtcggggtatgcattgtttctctctcaagggggcccaaatgactgact 746
Query: 601 tggacagctttc 612
||||||||||||
Sbjct: 747 tggacagctttc 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
