Query= MSMg01no519_n06.b1 MSMg01no519_n06.b1 CHROMAT_FILE:
MSMg01no519_n06.b1 PHD_FILE: MSMg01no519_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:40 2005
(626 letters)
>mm_chr13_99710706_99711731
Length = 1026
Score = 1181 bits (611), Expect = 0.0
Identities = 620/623 (99%)
Strand = Plus / Minus
Query: 4 ggaattcactatgtagagttacagagacccacgcagcctcctgagggctgggatcaagcg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ggaattcactatgtagagttacagagacccacgcagcctcctgagggctgggatcaagcg 651
Query: 64 cattcactgccaccatgaccagctgatttagatgtgaaaaagcaaatatactatggatgc 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 650 cattcactgccaccatgaccagcagatttagatgtgaaaaagcaaatatactatggatgc 591
Query: 124 cagcaactactggaacacccagtatgcaatgtccagttcacccctactagcagaaatctc 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 590 cagcaactactggaacacccagtatacaatgtccagttcacccctactagcagaaatctc 531
Query: 184 cagacagctccacactctagaccagagccctgaggactgtggtaagaaaggaatcagata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 530 cagacagctccacactctagaccagagccctgaggactgtggtaagaaaggaatcagcta 471
Query: 244 gacagacagaagagacctcgatacctcatgtctctcctcaaaaggcagttatagagcgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gacagacagaagagacctcgatacctcatgtctctcctcaaaaggcagttatagagcgga 411
Query: 304 aatccccattagggctcagacgagtcagtgatgatccattagcagtgtatctctcaggtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatccccattagggctcagacgagtcagtgatgatccattagcagtgtatctctcaggtc 351
Query: 364 tgagttacgatgtctttaatgaaaccatgggatgctgatggtccaaacagtgttctaaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgagttacgatgtctttaatgaaaccatgggatgctgatggtccaaacagtgttctaaca 291
Query: 424 gcctggctcccaccgaaagcacttttatacacttcatctccagacaagggcaagatctac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcctggctcccaccgaaagcacttttatacacttcatctccagacaagggcaagatctac 231
Query: 484 acaactttagtgctctatgtccatctatccctccctcccttgctccctcccttcctccca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acaactttagtgctctatgtccatctatccctccctcccttgctccctcccttcctccca 171
Query: 544 ctctttctcctttcccttctctcttctttcccccctcctcccctccctccctttttgtcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctctttctcctttcccttctctcttctttcccccctcctcccctccctccctttttgtcc 111
Query: 604 ttaaagcaactactttggaagaa 626
|||||||||||||||||||||||
Sbjct: 110 ttaaagcaactactttggaagaa 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_n06.g1 MSMg01no519_n06.g1 CHROMAT_FILE:
MSMg01no519_n06.g1 PHD_FILE: MSMg01no519_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:40 2005
(558 letters)
>mm_chr13_99582516_99583473
Length = 958
Score = 1004 bits (519), Expect = 0.0
Identities = 547/565 (96%), Gaps = 17/565 (3%)
Strand = Plus / Plus
Query: 1 tctaaacaggtacaaaacctcatctgatgactgaacaggagtggaggagccttggtgttc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tctaaacaggtacaaaacctcatctgatgtctgaacaggagtggaggagccttggtgttc 260
Query: 61 aacagagtctaggacgggttcagtacaccactcaggagtcaaaactgcacattctcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagagtctaggacgggttcagtacaccactcaggagtcaaaactgcacattctcttta 320
Query: 121 gacaccttttccaacacacacacacat-taagtatagctggggtcatctaatctttttca 179
||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 321 gacaccttttccaacacacacacacatctaa-------tg---tcatctaatctttttca 370
Query: 180 aatttaatgtttatgtgtatataaggtagtattcagtgaatacttgaaaaacacacaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatttaatgtttatgtgtatataaggtagtattcagtgaatacttgaaaaacacacaaat 430
Query: 240 ctttcactcttatcaacaagtgctcagttaaatacaactgcaagtaggttcttttaagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctttcactcttatcaacaagtgctcagttaaatacaactgcaagtaggttcttttaagtt 490
Query: 300 actgaaaacaaattttcttgtagttttcttttcttaatacaagtgcatgttttattttac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actgaaaacaaattttcttgtagttttcttttcttaatacaagtgcatgttttattttac 550
Query: 360 ctgttacttttagtaaataaagtttgtatgttgcagggagggaaggagggagggaaggta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctgttacttttagtaaataaagtttgtatgttgcagggagggaaggagggagggaaggta 610
Query: 420 taccggtatatgtatctaaaggtctggcatggtgtgcctgggaagcagaagcaggcaatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taccggtatatgtatctaaaggtctggcatggtgtgcctgggaagcagaagcaggcaatc 670
Query: 480 tgag------acaacctggtctacacagtgtgctccaggacagccagggctatgtaaata 533
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgagttaaaaacaacctggtctacacagtgtgctccaggacagccagggctatgtaaata 730
Query: 534 gaccctatctcaaaaaaaaaaaaaa 558
|||||||||||||||||||||||||
Sbjct: 731 gaccctatctcaaaaaaaaaaaaaa 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
