BAC Information

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BAC

Clone NameMSMg01-521F22
Chromosome13 (Build37)
Map Location 67,268,394 - 67,269,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759
Downstream geneRsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521F22.T7 (MSMg01no521_f22.b1)MSMg01-521F22.TJ (MSMg01no521_f22.g1)
ACCAG592181AG592182
length767754
length of high quality
(start - end)		659 (46 - 704)667 (75 - 741)
definitionCHROMAT_FILE: MSMg01no521_f22.b1 PHD_FILE: MSMg01no521_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:41 2005CHROMAT_FILE: MSMg01no521_f22.g1 PHD_FILE: MSMg01no521_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTCAGGAACCAGTGCAGAGGCCACACAGGAACACTGTTTATTG
GCTGGTATTCCATGGCTTGCTCAGCCTGCTTTCCTATACCATACAAAAAC
ACCTCCCCAGTGGGGTCCCACCCATATTGTAGATATCTCATTATCAACAC
TAATTAGGAAAATGCCATAGGCCTGGCTACAGGACAATGTCATGGAGACT
TTTTTTCAAATACTCTTCTCTCTCCTCAAATAATGCTAGCTAGTGTCAAG
TTGACCGGAGAACTATCCAGCAGAGTTCATCGTGGTATTTAAATGATTTT
AGTGGTTTTAATTAATTTAAGCTGTGATATCATTCATTGGTCTTCATTTC
AGGAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAG
TGGGAATGCCTGGAGCCTGCTCAGTGGAATCTGTACAGGGATGTGATGCT
GGAGAATTACAGCCACCTTGTGTTCCTGGGTGAGCACTGCATCTGTAGAG
CATTTGTATCTCACCATCAACATGCAGCTTCCTCACTTTGTACAATACGG
GACTCATGGGAGTATTTGCTTTTCAACAGAAACTTTCATATTCTTTTAAA
AAAATTAGTCAGGTTGTTGTACAGCTAAGAACTACTTCATTGATTTTCTC
TTTGTGTGTTTAACCTTTCTGTGTTAGACGTATATATCTTTCACTACCAG
AAATTCATGGGCTGGGG

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAAGGCCCCAGATCTTCCACAGATG
CACACTGGAGGAAACTGTTCTGGGCTGTTAGTGTATCCCTCACAAAGCAC
TGTGGTTTTCTTTGATTGGTTCCCTTGGCAAGGGAGACAGATACAGACTG
ATGGTCTGTATACTTGTTTGGAATGTGTATTGATTGAACTTGTGCTGTGC
AAGTCTAGATTTCTTTTTGTTGCATTTCTTCCTTCTCTCCTAGGGAAAAA
TAATGCATAATTGCATGCTCTGTCAGTTGCTGACATCACTAACCACCAGA
TGCAATGTCTCCTTATGCTCACAGTTCTCAGGACACACTGATTCCTCTAC
AGTAGGCTGTGCCTTGCTCATGTGTAGCTGAGACAGGAAATCACAAGTTC
AAGATGATGATACTTTATGTCCTGAGTGCTTTTCCCTCTTACCCTCCTGT
TAGCTCAGACGTGTGCAGAGATGTTATGGCTAGACCTCTGGATTAGCTGA
TCAGCAGGAATAATGCCTTTGAAAAGCCTAAGGAAAAGTAATAGAAGATG
GAGCTTGTTACGGTTTGTATATGTTTGGCCCAGTGAGTGGCACTATTAGA
AGAAGTAGCCTTGTTGGAGTAGGTATGTCCCTCTTGGAGTAGGTGTGTCA
CCATGGGTGTGGGTTTTAAGACCCTCATCCTAGCTACCTGGAAGCCAGTA
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_f22.b1 MSMg01no521_f22.b1 CHROMAT_FILE:
MSMg01no521_f22.b1 PHD_FILE: MSMg01no521_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:41 2005
         (659 letters)



>mm_chr13_67268191_67269249
          Length = 1059

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagtcaggaaccagtgcagaggccacacaggaacactgtttattggctggtat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagtcaggaaccagtgcagaggccacacaggaacactgtttattggctggtat 263

                                                                       
Query: 64  tccatggcttgctcagcctgctttcctataccatacaaaaacacctccccagtggggtcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccatggcttgctcagcctgctttcctataccatacaaaaacacctccccagtggggtcc 323

                                                                       
Query: 124 cacccatattgtagatatctcattatcaacactaattaggaaaatgccataggcctggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacccatattgtagatatctcattatcaacactaattaggaaaatgccataggcctggct 383

                                                                       
Query: 184 acaggacaatgtcatggagactttttttcaaatactcttctctctcctcaaataatgcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaggacaatgtcatggagactttttttcaaatactcttctctctcctcaaataatgcta 443

                                                                       
Query: 244 gctagtgtcaagttgaccggagaactatccagcagagttcatcgtggtatttaaatgatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctagtgtcaagttgaccggagaactatccagcagagttcatcgtggtatttaaatgatt 503

                                                                       
Query: 304 ttagtggttttaattaatttaagctgtgatatcattcattggtcttcatttcaggaaatg 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttagtggttttaattcatttaagctgtgatatcattcattggtcttcatttcaggaaatg 563

                                                                       
Query: 364 ctgtcattcagggatgtggccattgatttctctgcagaggagtgggaatgcctggagcct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgtcattcagggatgtggccattgatttctctgcagaggagtgggaatgcctggagcct 623

                                                                       
Query: 424 gctcagtggaatctgtacagggatgtgatgctggagaattacagccaccttgtgttcctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctcagtggaatctgtacagggatgtgatgctggagaattacagccaccttgtgttcctg 683

                                                                       
Query: 484 ggtgagcactgcatctgtagagcatttgtatctcaccatcaacatgcagcttcctcactt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtgagcactgcatctgtagagcatttgtatctcaccatcaacatgcagcttcctcactt 743

                                                                       
Query: 544 tgtacaatacgggactcatgggagtatttgcttttcaacagaaactttcatattctttta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtacaatacgggactcatgggagtatttgcttttcaacagaaactttcatattctttta 803

                                                                   
Query: 604 aaaaaattagtcaggttgttgtacagctaagaactacttcattgattttctctttg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaaaaattagtcaggttgttgtacagctaagaactacttcattgattttctctttg 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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