BAC Information

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BAC

Clone NameMSMg01-521M01
Chromosome13 (Build37)
Map Location 99,963,625 - 100,091,870
singlet/doubletdoublet
Overlap geneZfp366, Ptcd2
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797
Downstream geneMrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M01.T7 (MSMg01no521_m01.b1)MSMg01-521M01.TJ (MSMg01no521_m01.g1)
ACCAG592474AG592475
length732736
length of high quality
(start - end)
670 (57 - 726)630 (84 - 713)
definitionCHROMAT_FILE: MSMg01no521_m01.b1 PHD_FILE: MSMg01no521_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:11 2005CHROMAT_FILE: MSMg01no521_m01.g1 PHD_FILE: MSMg01no521_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,963,625 - 99,964,290)(100,091,241 - 100,091,870)
sequence
GTTAGGCGGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCAAACTATTAATAACCCAATGGGACATCATTCAG
TTACTAGGATCTGCTATGTTTGTGCAGTGGAATACTGCTCAGGCTTGAAA
ACCGACTTCTGATACAGCCCATACTGTGAGTGAGTCTTAGAATCATCCCT
TGAATCAGACGATCCAGGCATAATACTACTGAAGGTTACTGACATACAAG
AAGTGCTGACAGCCTTTATCCATATGAAATTTCTAGAAGGACAAAATGAT
AGAGACAAAGATTTGATTTGCGCTTTTCTGGAACTGGGGTTGGGCATATA
GAAGGACTGTTAATAAGTATAAAGGAATGCTTGAGATTGATGACATTATT
CTAAAACTGGATTTTAGTGATGATTGAACTTTCTAAATTGCATCACACTG
AATATTTAAAAACACTTAGTTTTATACTATGTAAATTATACCTCAATAAA
ATTGAAAGAACAGTCTCCAATCTGTATGGTTCCAGAGAAGGCCACAATGC
CACAATCTCATAGAATGGATCATTCCTATAAGCAAAACAAAAACAAAAGC
CTAGTTTTCATTTGTGTAGGATATCTCTAGAAAGATATGATGGACTTGTT
AATAGAACTTGGCTTTGGGAAAGAGACTGGAGAGATAGAATGGAGTCTTG
ATTCCTACCTCAGGCATGCCAGGTCTCTAACC
GGGGCCGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAATCAAACTCAAGA
CTGGTGTATGAAACACCTCTGATATGAGCCTCCTCACTAGCCCCACCATG
GCGATGTCATTAGCTATAGGAAAGTACATTTTGGCTGATGAGTGTACATG
CAAAGCACTTTAAAAACATGTATATGCTAACGAATTAGGGAATAGTATTT
AAAAGGGGTACCTGTCAGCTCAGGCGTACCTCAGCATTGAAACGCCAGGT
CAGTCTTCTCTGGTTTTTATTCAGATCTTGATCCACATCCAGTCAAATAT
GTTGGAAAGCCTGTTAAAGATCTTAGAGGACTCTCTTGACACAAATTTAT
CGAAATTTGTAAGAAGACACACATTCTCAGAGGAAGTGGTAAGTGTGCCA
ACGCTGCAGGTGACACCGAGTGCAAGCTCACGTGCTCACCTGGTGTTCCG
GTCCCGAGACCACCTGTGCAGCAAGAGGCCAGACACAGCAGTCTCTCTTG
CGTGGCTTTTGGACTTCTCAGGTCCCTCCCATGTTGCTCTCTCCCTGTAC
TATTCTATAGGTCCCTTCCCTCCTCTGAATAATGACTTCACACCTTTTCA
GTTTTCTCTCAAGTATCCATACATTTTCCTTGCTCCTCGCTCTCAGGTAA
CCCTTGCTTCCTTTGGTGGGAGGAAATAGAAGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m01.b1 MSMg01no521_m01.b1 CHROMAT_FILE:
MSMg01no521_m01.b1 PHD_FILE: MSMg01no521_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:11 2005
         (670 letters)



>mm_chr13_99963421_99964490
          Length = 1070

 Score = 1226 bits (634), Expect = 0.0
 Identities = 658/666 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaactattaataacccaatgggacatcattcagttactaggatctgctatgtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaactaataataacccaatgggacatcattcagttactaggatctgctatgtt 264

                                                                       
Query: 65  tgtgcagtggaatactgctcaggcttgaaaaccgacttctgatacagcccatactgtgag 124
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 265 tgtgcagtggaatactgctcaggcctgaaaaccggcttctgatacagcccatactgtgag 324

                                                                       
Query: 125 tgagtcttagaatcatcccttgaatcagacgatccaggcataatactactgaaggttact 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 325 tgagtcttagaatcatcccttgaatcagaagatccaggcataatactactgaacgttact 384

                                                                       
Query: 185 gacatacaagaagtgctgacagcctttatccatatgaaatttctagaaggacaaaatgat 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacatacaagaagtgttgacagcctttatccatatgaaatttctagaaggacaaaatgat 444

                                                                       
Query: 245 agagacaaagatttgatttgcgcttttctggaactggggttgggcatatagaaggactgt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 agagacaaagatttgatttgcgcttttctggagctggggttgggcatatagaaggactgt 504

                                                                       
Query: 305 taataagtataaaggaatgcttgagattgatgacattattctaaaactggattttagtga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taataagtataaaggaatgcttgagattgatgacattattctaaaactggattttagtga 564

                                                                       
Query: 365 tgattgaactttctaaattgcatcacactgaatatttaaaaacacttagttttatactat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgattgaactttctaaattgcatcacactgaatatttaaaaacacttagttttatactat 624

                                                                       
Query: 425 gtaaattatacctcaataaaattgaaagaacagtctccaatctgtatggttccagagaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtaaattatacctcaataaaattgaaagaacagtctccaatctgtatggttccagagaag 684

                                                                       
Query: 485 gccacaatgccacaatctcatagaatggatcattcctataagcaaaacaaaaacaaaagc 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 685 gccacaatgccacaatctcatagaatggattattcctataagcaaaacaaaaacaaaagc 744

                                                                       
Query: 545 ctagttttcatttgtgtaggatatctctagaaagatatgatggacttgttaatagaactt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctagttttcatttgtgtaggatatctctagaaagatatgatggacttgttaatagaactt 804

                                                                       
Query: 605 ggctttgggaaagagactggagagatagaatggagtcttgattcctacctcaggcatgcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggctttgggaaagagactggagagatagaatggagtcttgattcctacctcaggcatgcc 864

                 
Query: 665 aggtct 670
           ||||||
Sbjct: 865 aggtct 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no521_m01.g1 MSMg01no521_m01.g1 CHROMAT_FILE:
MSMg01no521_m01.g1 PHD_FILE: MSMg01no521_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:11 2005
         (630 letters)



>mm_chr13_100091142_100092171
          Length = 1030

 Score = 1110 bits (574), Expect = 0.0
 Identities = 616/630 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaatcaaactcaagactggtgtatgaaacacctctgatatgagcctcctcactagccc 60
           ||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||
Sbjct: 729 aggaatcaaactcaagactggtgtatgaagcacctctgatatgagcttcctctctagtcc 670

                                                                       
Query: 61  caccatggcgatgtcattagctataggaaagtacattttggctgatgagtgtacatgcaa 120
           ||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 669 cactatggcgatgtcattatctatattaaagtacattttggctgatgagtgtacatgcaa 610

                                                                       
Query: 121 agcactttaaaaacatgtatatgctaacgaattagggaatagtatttaaaaggggtacct 180
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 609 agcacttaaaaaacatgtatatgctaacgaattagggaatagtatttaaaaggggtgcct 550

                                                                       
Query: 181 gtcagctcaggcgtacctcagcattgaaacgccaggtcagtcttctctggtttttattca 240
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 549 gtcagctcaggcgtacctcagcattgaaatgccagctcagtcttctctggtttttattca 490

                                                                       
Query: 241 gatcttgatccacatccagtcaaatatgttggaaagcctgttaaagatcttagaggactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gatcttgatccacatccagtcaaatatgttggaaagcctgttaaagatcttagaggactc 430

                                                                       
Query: 301 tcttgacacaaatttatcgaaatttgtaagaagacacacattctcagaggaagtggtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcttgacacaaatttatcgaaatttgtaagaagacacacattctcagaggaagtggtaag 370

                                                                       
Query: 361 tgtgccaacgctgcaggtgacaccgagtgcaagctcacgtgctcacctggtgttccggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgccaacgctgcaggtgacaccgagtgcaagctcacgtgctcacctggtgttccggtc 310

                                                                       
Query: 421 ccgagaccacctgtgcagcaagaggccagacacagcagtctctcttgcgtggcttttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccgagaccacctgtgcagcaagaggccagacacagcagtctctcttgcgtggcttttgga 250

                                                                       
Query: 481 cttctcaggtccctcccatgttgctctctccctgtactattctataggtcccttccctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cttctcaggtccctcccatgttgctctctccctgtactattctataggtcccttccctcc 190

                                                                       
Query: 541 tctgaataatgacttcacaccttttcagttttctctcaagtatccatacattttccttgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 189 tctgaataatgacttcacaccttttcagttttctctcaagtatccatacctttcccttgc 130

                                         
Query: 601 tcctcgctctcaggtaacccttgcttcctt 630
           ||||||||||||||||||||||||||||||
Sbjct: 129 tcctcgctctcaggtaacccttgcttcctt 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)