Query= MSMg01no522_j20.b1 MSMg01no522_j20.b1 CHROMAT_FILE:
MSMg01no522_j20.b1 PHD_FILE: MSMg01no522_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:15 2005
(629 letters)
>mm_chr13_43360618_43361646
Length = 1029
Score = 907 bits (469), Expect = 0.0
Identities = 490/501 (97%), Gaps = 7/501 (1%)
Strand = Plus / Minus
Query: 5 gaattcatgttcctcctgcttctctctttcaactgcaggattgcaggcaagcgccacatt 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcatgttcctcctgcttctgtctttcaactgcaggattgcaggcaagcgccacatt 435
Query: 65 gcctggatgctatttccatcgctactagtttgcctgtccttttgaagttataaaaacata 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcctggatgttatttccatcgctactagtttgcctgtccttttgaagttataaaaacata 375
Query: 125 ctatgactgaggaaacccgaacaaatatgctttgaaagaagaaaggacactactgcctgt 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctatgattgaggaaacccgaacaaatatgctttgaaagaagaaaggacactactgcctgt 315
Query: 185 atttctgatctgcatatcttcaaatgattcaataattgtccctgcggggaatctgcaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atttctgatctgcatatcttcaaatgattcaataattgtccctgcggggaatctgcaagg 255
Query: 245 acccattgtattttgaatagtgaaaaaaaaattacctttgtagccggtcccattcatcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acccattgtattttgaatagtgaaaaaaaaattacctttgtagccggtcccattcatcta 195
Query: 305 ataaacatttattcaagctttgctatgcatgaaccactttgttcgatgctgaggtgacta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ataaacatttattcaagctttgctatgcatgaaccactttgttcgatgctgaggtgacta 135
Query: 365 caaaagagcaaagataacgtctctgggtctgagatgcatggagctgagtgagagcagata 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 134 caaaagagcaaagataacgtctctgggtctgagatgcatggagctgagtgaaagcagata 75
Query: 425 cactgctaggcagtgatgggggggggggcggcggagaggctgtctgcaccctgtggctct 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 74 cactgctaggcagtgatggggg-------ggcggagaggctgtctgcaccctgtggctct 22
Query: 485 ggaccaatcaaagcagtcttt 505
|||||||||||||||||||||
Sbjct: 21 ggaccaatcaaagcagtcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_j20.g1 MSMg01no522_j20.g1 CHROMAT_FILE:
MSMg01no522_j20.g1 PHD_FILE: MSMg01no522_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:15 2005
(605 letters)
>mm_chr13_43347430_43348433
Length = 1004
Score = 1013 bits (524), Expect = 0.0
Identities = 581/608 (95%), Gaps = 17/608 (2%)
Strand = Plus / Plus
Query: 1 atcccatagacaaggctggcctccaactaagagatctaccctgtctctgcatcctaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atcccatagacaaggctggcctccaactaagagatctaccctgtctctgcatcctaaatg 261
Query: 61 ctgggattaaaggcgtgggccactgcttccaccacccagccagagctgcctctttctaaa 120
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct: 262 ctgggattaaaggcgtgggccactgctac-accacccagccagagctgcctctttctaga 320
Query: 121 gcctttgtctaagcacctccaaacacacactgtaccccactcgagactgcttttagctca 180
|||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 321 gcctttgtctgagcacctccaaacacatactgtaccc-actcgagactgcttttagctca 379
Query: 181 tcataaaaaaaggtgctttggctctgcagcttcccatagctgctttttcctctttctttc 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tcataaaaaaaggtgctttggctctgcagcttcccatagctggattttcctctttctttc 439
Query: 241 cccctatttatttatttttgtattgtacgctcatgtacacatatggtcacatgtgtcgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cccctatttatttatttttgtattgtacgctcatgtacacatatggtcacatgtgtcgtg 499
Query: 301 gcacacacaaaggtcaaaggtcagccagtaagcctgactgctcggttccaagagccacgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcacacacaaaggtcaaaggtcagccagtaagcctgactgctcggttccaagagccacgt 559
Query: 361 ggcagaaggaagaactatctggagggagaggaatcctagcaagaaaagacagagatgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggcagaaggaagaactatctggagggagaggaatcctagcaagaaaagacagagatgctg 619
Query: 421 caaggcagtagacagacagacagacagacagacagacatggtgctggagtagtagctaag 480
|||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 620 caaggcagtagacagacagacagaca------------tggcgctggagtagtagctaag 667
Query: 481 agcttacatcttggtccacaatcataaggcagagagaaccaattgggaatggtgtagagt 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agcttacatcttgatccacaatcataaggcagagagaaccaattgggaatggtgtagagt 727
Query: 541 tttgaaacctcaaagcccacccacagtgacacatctc-t--aaagaggcaacatcatcta 597
||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||
Sbjct: 728 tttgaaacctcaaagcccacccacagtgatagatctcctccaaagaggcaacatcatcta 787
Query: 598 atccttcc 605
||||||||
Sbjct: 788 atccttcc 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space: 591430
Effective search space used: 591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
