Query= MSMg01no522_k24.b1 MSMg01no522_k24.b1 CHROMAT_FILE:
MSMg01no522_k24.b1 PHD_FILE: MSMg01no522_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:21 2005
(423 letters)
>mm_chr13_104105273_104106095
Length = 823
Score = 605 bits (313), Expect = e-177
Identities = 349/361 (96%), Gaps = 2/361 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcactgtattcagcttttatgatgtattaatttgcaggcatgattccaaacgg 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcatcactgtactgagcttttatgatgtattaatttgcaggcatgattccaaactg 264
Query: 65 ttttaatgtggaagcccggcagctggcatgtgccacatactttcccggctc-acagagac 123
||||||||||||||||| |||||||||| || ||||||||||||||||||| | ||||||
Sbjct: 265 ttttaatgtggaagcccagcagctggcacgttccacatactttcccggctcta-agagac 323
Query: 124 ataccacagcacagtagaattaccttgctatagacatgctacaaagggccaaagggcccc 183
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ataccacagcacagtagaattgccttgctatagacatgctacgaagggccaaagggcccc 383
Query: 184 cacctcctactgcatgaggtttcatcttacatggccaagcatagtgggccatgatttgtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacctcctactgcatgaggtttcatcttacatggccaagcatagtgggccatgatttgtc 443
Query: 244 gtactgaatattttggtaatgctgtagtttaattattggaccacagttatttttaaatat 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 gtactgaatattttggtaatgctgtagtttaattattgaaccacagttatttttaaatat 503
Query: 304 cacttccctgtttagttcataagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacttccctgtttagttcatcagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 563
Query: 364 a 364
|
Sbjct: 564 a 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_k24.g1 MSMg01no522_k24.g1 CHROMAT_FILE:
MSMg01no522_k24.g1 PHD_FILE: MSMg01no522_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:21 2005
(245 letters)
>mm_chr13_104275198_104275842
Length = 645
Score = 400 bits (207), Expect = e-116
Identities = 242/267 (90%), Gaps = 22/267 (8%)
Strand = Plus / Minus
Query: 1 cagacaaaactccagagcaaagatggggaagtgggcacaaagtaccattgctaaccaaga 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 302 cagacaaaactccagagcaaagatggggaagtgggcacaaagtcccattgctaaccaaga 243
Query: 61 agatattaacaattattatctgctggatgagggaaaattcag----------cagagtaa 110
||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 242 agatatttacaattattatctgctggatgagggaaaattcagtttccttcaacagagtaa 183
Query: 111 cactgagtatatcagctaccctacaggcaggcctcatggtcaggagtagttgactaacac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cactgagtatatcagctaccctacaggcaggcctcatggtcaggagtagttgactaacac 123
Query: 171 aaaactgactccatatttattgtttcatttgttttgttgttgttgttggtggtggtggt- 229
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 122 aaaactgactccatatttattgtttcatttgctttgttgttgttgttggtggtggtggtg 63
Query: 230 -----------agtgtgtgtgtgtgtg 245
||||||||||||||||
Sbjct: 62 gtggtggtggtagtgtgtgtgtgtgtg 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
