Query= MSMg01no522_p04.b1 MSMg01no522_p04.b1 CHROMAT_FILE:
MSMg01no522_p04.b1 PHD_FILE: MSMg01no522_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:42 2005
(542 letters)
>mm_chr13_72697446_72698387
Length = 942
Score = 617 bits (319), Expect = 0.0
Identities = 330/335 (98%), Gaps = 4/335 (1%)
Strand = Plus / Minus
Query: 5 gaattcagcaaagggtgctgccctagtaaatagaagtggaaagtaatggaggaaggggcg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gaattcagcaaagggtgctgccctagtaaatagaagtggaaagtaatggaggaaggggcg 276
Query: 65 tggtatgagcttagacttccacgtgcatatgtacacatacctcacacaggatgtatgcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggtatgagcttagacttccacgtgcatatgtacacatacctcacacaggatgtatgcac 216
Query: 125 attcatgtgcgcaca--cacacacacacacacacacacacacacacacacacacacacac 182
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 attcatgtgcgcacacgcacacacacacacacacacacacacacacacacacacacacac 156
Query: 183 a--cacgcatcccgctaaaaagaagattgtaactccgtccagttaaagttcactgggaca 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgcacgcatcccgctaaaaagaagattgtaactccgtccagttaaagttcactgggaca 96
Query: 241 taaatatcctgtgactctagacaaaatattgatccatgcaagctgttcctttgggaggag 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 95 taaatatcctgtgactctagccaaaatattgatccatgcaagctgttcctttgggaggag 36
Query: 301 gcattcatgtcagttctagctcaggggcctcgaga 335
|||||||||||||||||||||||||||||||||||
Sbjct: 35 gcattcatgtcagttctagctcaggggcctcgaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_p04.g1 MSMg01no522_p04.g1 CHROMAT_FILE:
MSMg01no522_p04.g1 PHD_FILE: MSMg01no522_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:42 2005
(342 letters)
>mm_chr13_72531787_72532528
Length = 742
Score = 598 bits (309), Expect = e-175
Identities = 333/343 (97%), Gaps = 4/343 (1%)
Strand = Plus / Plus
Query: 1 catcagaatactttatttgatgaaaacccatgttttaattacagagctattgctactttg 60
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 201 catcagaatactttatttgatgaaagcccatcttttaattacagagctattgctactttg 260
Query: 61 tcattgcttgattaagtgtcaatccttcacttaagcactgtgtacatttattcactggcc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcattgcttgattaagtgtcagtccttcacttaagcactgtgtacatttatccactggcc 320
Query: 121 ttagcctgagctcctgatgtggttgtgaatgtgactctcctaagtctctgtaacaatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcctgagctcctgatgtggttgtgaatgtgactctcctaagtctctgtaacaatgtg 380
Query: 181 ttgccagagcattctacgcaaagcttggcaagtagcctgttaattccctttgtcaacttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccagagcattctacgcaaagcttggcaagtagcctgttaattccctttgtcaacttg 440
Query: 241 gttggattaagaagcaccttgggctataagggtgtatacctcagtgtggtgtgtgtgtgt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttggactaagaagcaccttgggctataagggtgtatacctcagtgtggtgtgtgtgtgt 500
Query: 301 gtgtgtctgtgtgt----gtgtgtgtgtctgtgtgtgtgtgtg 339
|||||||||||||| |||||||||||| ||||||||||||
Sbjct: 501 gtgtgtctgtgtgtctgtgtgtgtgtgtctatgtgtgtgtgtg 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
