Query= MSMg01no522_p24.b1 MSMg01no522_p24.b1 CHROMAT_FILE:
MSMg01no522_p24.b1 PHD_FILE: MSMg01no522_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:46 2005
(540 letters)
>mm_chr13_8978734_8979671
Length = 938
Score = 994 bits (514), Expect = 0.0
Identities = 530/536 (98%), Gaps = 2/536 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgctgtgtccctgaatctcggagagcccaacccccaaccctgggtacactca 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgctgtgtccctgaatcttggagagcccaacccccaaccctgggtacactca 264
Query: 65 gtttgcatctcctgaatcaagtccacttcgagtggctaaagccctgtcctctgttacata 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 gtttgcatctcctgaatcaagtccacttcgagtggctaaagccctgtcttctgttacata 324
Query: 125 cccaccacccagcattactttttctcgtgcacaggcaggccttctatcccttttcataag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccaccacccagcattactttttctcgtgcacaggcaggccttctatcccttttcataag 384
Query: 185 aaacccagacaaagaggtccagtagcctaccctcttcttcttgggctcttcaatctccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacccagacaaagaggtccagtagcctaccctcttcttcttgggctcttcaatctccat 444
Query: 245 tctcttccttcgagctatcactccttctgggatgaaagggggtctctcctaagaagacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcttccttcgagctatcactccttctgggatgaaagggggtctctcctaagaagacat 504
Query: 305 catttaaagtatatgaaatgccttcccaagtatgagagaaacttaaaggaaccaaacaca 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catttaaagtatatgaaatgcattcccaagtatgagagaaacttaaaggaaccaaacaca 564
Query: 365 aaaaaacaaaggcaatctgcaagggagacataaaacaacccaaaccaactgaaataaaat 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaaacaaaggcaatctgcaaggaagacataaaacaacccaaaccaactgaaataaaat 624
Query: 425 gtattctggggagttgagttttggagccagagtgggcaagagagacaagacaaccccaaa 484
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 gtattctggggagttgagttttggagccagagtgggcaagaga--caagacaaccccaaa 682
Query: 485 attgattctaaagttcatttggaaaagaataaaaattatcctaaaacatgtaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attgattctaaagttcatttggaaaagaataaaaattatcctaaaacatgtaagaa 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 938
Length adjustment: 10
Effective length of query: 530
Effective length of database: 928
Effective search space: 491840
Effective search space used: 491840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_p24.g1 MSMg01no522_p24.g1 CHROMAT_FILE:
MSMg01no522_p24.g1 PHD_FILE: MSMg01no522_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:46 2005
(495 letters)
>mm_chr13_9064394_9065288
Length = 895
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%)
Strand = Plus / Minus
Query: 1 cacctggagatggttattttcatcaaaaagaaagaatataaacgggaagcagacttttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cacctggagatggttattttcatcaaaaagaaagaatataaacgggaagcagacttttga 636
Query: 61 ctcaggcacgagccagagacactctccttatactctaagatctagcattatctttgttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctcaggcacgagccagagacactctccttatactctaagatctagcattatctttgttct 576
Query: 121 tgcttcatctatttatagtttcatcgtggccttcagttgctgtatggacccagcagcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgcttcatctatttatagtttcatcgtggccttcagttgctgtatggacccagcagcaag 516
Query: 181 aaattctcaaaacagactagaacgaagaaaaataaatggaactgcggtaacagagccaca 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 515 aaattctcaaaacagactagaacgaagaaaaataaatggaactgcagtaacagagccaca 456
Query: 241 caactgtccaggaacttcacatcagccatagagccgagagcctcatttctcatgtgtaaa 300
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 455 caactgtccaggaacttcacaccagccatggagccgagagcctcatttctcatgtgtaaa 396
Query: 301 atcaaatagatttttaaggatgtctaagtaaggagaaataacagcacgaaacagaaccac 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 395 atcaaatagatttttaaggatgtctaagtaaggagaaataacagcatgaaacagaaccac 336
Query: 361 tgggaaaagtaggataaatcaaccccagatataatggtgctaacttagaaaagagacaag 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 335 tgggaaaagtaggataaatcaaccccagatatagtggtgctaacttagaaaagagacaag 276
Query: 421 agctttaaacaatgttaaaaacaatagtgtaatcagagagactcaagaaagtgttgaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agctttaaacaatgttaaaaacaatagtgtaatcagagagactcaagaaagtgttgaatt 216
Query: 481 tgacagaaggagatg 495
|||||||||||||||
Sbjct: 215 tgacagaaggagatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
