BAC Information

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BAC

Clone NameMSMg01-523C14
Chromosome13 (Build37)
Map Location 6,643,138 - 6,643,548
singlet/doubletsinglet
Overlap genePfkp
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1
Downstream geneLOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523C14.T7 (MSMg01no523_c14.b1)MSMg01-523C14.TJ (MSMg01no523_c14.g1)
ACCAG593547AG593548
length747781
length of high quality
(start - end)
411 (66 - 476)399 (111 - 509)
definitionCHROMAT_FILE: MSMg01no523_c14.b1 PHD_FILE: MSMg01no523_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:59 2005CHROMAT_FILE: MSMg01no523_c14.g1 PHD_FILE: MSMg01no523_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTTTTTTGTGTGTCTAAACAACTCACTTTTCGAAGAGGATCCGCG
GAATTCTGCTTTTTGCTCTTCTGCCTGAATACTCTAACATAATCACGTAG
TGACTGTCATAGGTGGATGCAGCTTTGTGTCCTGAAGTCTGTCTTCACCT
ATGGCAACCTTATCTTCTTATCTCTAATCCTGATGGCTTTTGATAGCAAA
TCAATAGATCAAAACTTAAACAGCCTGTGATTCCCTGATAAAAGACTTCC
TCACAACCAAGAGCTTGCTACTCACCAATGGAAAGCGTGCCTAGGGGTTT
ATCTTACTTACTTACTCCGGAAAGCCGACAAAATATCATCTAGCTTGCAC
TGGTCATAGCAACACATGCCACAAAAAGATACTTGTCTTCAGAGAAGAAT
GACGCACCAGGGCTTGGGGAGCAGCCCGATTGTAAAGCACTTGCCTGTAT
TGGACAAAGCTCTGGGTTTGACCCTCAGCACCAGGACATAAACAAACACT
GTGTGCTGTTGTACAAAGCACCTACTCTGTGATGGACTCTGCCCTGTAGT
TTTGCTCAAATAATTATATTTTAACTTGTAAAAATGCACTCAAAGAACAG
ACAGAAAGAATGTTAGGATAGCAAGCATCTCTGTGATTTTAAGGGCACTC
TAGTCCACAGAATGAGTTCCTGGACAGCCACAGCTTCTCTAAGACCCCAT
AACCAACCAAAATGACCAAAGTGGTTATTGAACCTTGTGTCATCTCN
GTGCATGCCCCTGTGTGGNTGGNTGCATGTGGTGGAGCAATGCAGTGGGT
GGGTGCTGGGGCCGCCTGTTTCCCTAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGTCTCTCCTGTAAGGTGGTCTGCCACAGACTAACCCCTT
CTGGGTCTTCTATCTGCTCAGAACAGGTTCTGGTTGTAGGTGGGCAAAGG
AGTTGGCGAGAGTGGCAAACAGACACGACACAAGGAAGTATAGATCTGAA
TGTAATTTGTCAAATCGAGCATCAAACTTTTTATATAGAAGAAAATAGGG
AAGTTAGGTGACACACCGGCAAGGTACAATGAGGTTACCAGATTCTTACA
TAAAACAGAGAAATGCAAACACAGAAGGACTGGCAGGAACCAGCTGGGAT
AAAAGTCAATGTTAACTGGAATCAAGAAGTTACAGAGACAAAGTTTGGAG
CTGAGACGAAAGGATGGACCATCTAGAGACTGCCATACCCGGGGATCCAT
CCCATAATCAGCCTCCAAACACTGAAACCATTGCATACACTAGCAAGATT
TTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCCGGGAC
CTAGCACACACAGAAGTGGATGCTTACAGTTCTCTATTGGATGGATTACA
CGGCCCCCAATGTTTGAGCTAGAGAAAGTCCTCAGGAGCTTAAGGGGGCT
GCGACCCTATATGTGGAACAACATTATTAACTTACCCGAACCTCCTGGAG
CTCATGTTCTTATCTGCATATGTATCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_c14.b1 MSMg01no523_c14.b1 CHROMAT_FILE:
MSMg01no523_c14.b1 PHD_FILE: MSMg01no523_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:59 2005
         (411 letters)



>mm_chr13_6642938_6643748
          Length = 811

 Score =  795 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctgcctgaatactctaacataatcacgtagtgactgtcataggtggatgcagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctgcctgaatactctaacataatcacgtagtgactgtcataggtggatgcagctt 260

                                                                       
Query: 61  tgtgtcctgaagtctgtcttcacctatggcaaccttatcttcttatctctaatcctgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtcctgaagtctgtcttcacctatggcaaccttatcttcttatctctaatcctgatg 320

                                                                       
Query: 121 gcttttgatagcaaatcaatagatcaaaacttaaacagcctgtgattccctgataaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttgatagcaaatcaatagatcaaaacttaaacagcctgtgattccctgataaaaga 380

                                                                       
Query: 181 cttcctcacaaccaagagcttgctactcaccaatggaaagcgtgcctaggggtttatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctcacaaccaagagcttgctactcaccaatggaaagcgtgcctaggggtttatctt 440

                                                                       
Query: 241 acttacttactccggaaagccgacaaaatatcatctagcttgcactggtcatagcaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttacttactccggaaagccgacaaaatatcatctagcttgcactggtcatagcaacac 500

                                                                       
Query: 301 atgccacaaaaagatacttgtcttcagagaagaatgacgcaccagggcttggggagcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgccacaaaaagatacttgtcttcagagaagaatgacgcaccagggcttggggagcagc 560

                                                              
Query: 361 ccgattgtaaagcacttgcctgtattggacaaagctctgggtttgaccctc 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgattgtaaagcacttgcctgtattggacaaagctctgggtttgaccctc 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)