BAC Information

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BAC

Clone NameMSMg01-524C21
Chromosome13 (Build37)
Map Location 96,226,224 - 96,367,160
singlet/doubletdoublet
Overlap geneS100z, F2rl1
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp
Downstream geneF2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524C21.T7 (MSMg01no524_c21.b1)MSMg01-524C21.TJ (MSMg01no524_c21.g1)
ACCAG594318AG594319
length781757
length of high quality
(start - end)		616 (43 - 658)436 (71 - 506)
definitionCHROMAT_FILE: MSMg01no524_c21.b1 PHD_FILE: MSMg01no524_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:22 2005CHROMAT_FILE: MSMg01no524_c21.g1 PHD_FILE: MSMg01no524_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,226,224 - 96,226,835)(96,366,725 - 96,367,160)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGTGTTATCTCCTTGTGATGGGGATCAAAGGAAAAACAAGAGG
CCAGAAAGACAACATTCATTCACATACATAATACAGAAAGGGAGGCAGGT
CAATTATTTTTCATAAAGTCATGGACACTCTGAGTCAGATGCACACCCCC
AACACACACCCAAGGCCTTCCTCTCAATTTAGAGTTTGAAAGGGAAGGAG
ATGAACCCTGAGGTCAGACCGGGCAAGGTGGCTGCTTCATTTATGATGCT
GAGATGGATTTAGATCGCCACATATGGCATCTCATAGCACACGGCTCCCG
CCTGTGCAGAGCTCTGGGTGTGATGAGATGAAGAGAGGTCAAATTGACCT
CAATGATGTGTCAAATTAGTAATCATAGCAATTCCACATTGTCACCTGCT
CTTTGGCAGGTTGGATACGCCACGTGTAGGATTGATTATGCAAATGACTC
CTGTTTAATTAAAACATCTGTTCCACATGTTACAAGCCCTGACGGTGAAG
GTCTTACTGAAGGTGAGCTTCAGTTCCACATGAAATGTGACGTGGCTGCC
TTGCATGGTGGTTTGCCGGCATCTCGCTCACCCTTTCTGTCCTTCATCTC
TCATGGCCCCCATTGGGTGCGCTGGACAATAACTACTTTGNTGTTCATTC
ATAATACATATTGACATGAACTATAAAAATGAGAATAGAAACTATGTAAT
AACCATGAGAGATTTATCTTTTCCTTTCATA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTTATAGGCCAGGCTGACTTCAGACTCA
CAGAGATCCGCCTGCTTCTGCCTCCCGAGTGCTGAGATTAAAGGTGTGTG
CCACCACTGCCTGGCTAGGATTCATACTTTTGATCCCTCAGGTCGGCCGG
CCTCCCAGGCAGAGGGATTGAAGGTAGACACCACCACACCCACTACACTG
GGGCAGTTTGTAAAGCAGCAGCAACCTGTGCTTAGCTCGGCTTAATTCAT
GTGTTTGAGGCAATACCTATCTTCCTGAGAGTTCCCTCCCTTGCAGAGGT
TTAGTCTGTTGCTATGTATTGTAATGCTAAGCGCAGGCCCCCAAGGCCTG
GTTGCCACAGAGATGAGAGAGTCTGCACGTAGACACATAAGAGTGATGCT
ATATGACCTTGCCCCCAAGTTACTTCTGATTGGTGAATAACGATGCTGGG
CAGAAGACGCATAGAAGGTGGAGGTGGGGGTGGGGAGTATACTGGAGGGG
GTNTTNTNNTTTNTTNTTTTGTTTTTGTTGTTTTTTTTTTTGGTTTTTTT
TTTTGTGTTGTTTTTGTTTTTTNTTTTGTTTTGGTTTTTGTGTTNTNTTT
TTTGTTGTTGTTTNGTTTGTTTGTTNTTGTTTGGTTTGTTTTTTGTTGGG
TTGTGGGTGTGTTTGTTGTTTTTTGTGTTCGTTCTTTCCTTCTCTCTTCC
TCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_c21.b1 MSMg01no524_c21.b1 CHROMAT_FILE:
MSMg01no524_c21.b1 PHD_FILE: MSMg01no524_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:22 2005
         (616 letters)



>mm_chr13_96226020_96227035
          Length = 1016

 Score = 1176 bits (608), Expect = 0.0
 Identities = 611/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaactgtgttatctccttgtgatggggatcaaaggaaaaacaagaggccagaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaactgtggtatctccttgtgatggggatcaaaggaaaaacaagaggccagaa 264

                                                                       
Query: 65  agacaacattcattcacatacataatacagaaagggaggcaggtcaattatttttcataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacaacattcattcacatacataatacagaaagggaggcaggtcaattatttttcataa 324

                                                                       
Query: 125 agtcatggacactctgagtcagatgcacacccccaacacacacccaaggccttcctctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtcatggacactctgagtcagatgcacacccccaacacacacccaaggccttcctctca 384

                                                                       
Query: 185 atttagagtttgaaagggaaggagatgaaccctgaggtcagaccgggcaaggtggctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttagagtttgaaagggaaggagatgaaccctgaggtcagaccgggcaaggtggctgct 444

                                                                       
Query: 245 tcatttatgatgctgagatggatttagatcgccacatatggcatctcatagcacacggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatttatgatgctgagatggatttagatcgccacatatggcatctcatagcacacggct 504

                                                                       
Query: 305 cccgcctgtgcagagctctgggtgtgatgagatgaagagaggtcaaattgacctcaatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccgcctgtgcagagctctgggtgtgatgagatgaagagaggtcaaattgacctcaatga 564

                                                                       
Query: 365 tgtgtcaaattagtaatcatagcaattccacattgtcacctgctctttggcaggttggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgtcaaattagtaatcatagcaattccacattgtcacctgctctttggcaggttggat 624

                                                                       
Query: 425 acgccacgtgtaggattgattatgcaaatgactcctgtttaattaaaacatctgttccac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acgccacgtgtaggattgattatgcaaatgactcctgtttaattaaaacatctgttccac 684

                                                                       
Query: 485 atgttacaagccctgacggtgaaggtcttactgaaggtgagcttcagttccacatgaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgttacaagccctgacggtgaaggtcttactgaaggtgagcttcagttccacatgaaat 744

                                                                       
Query: 545 gtgacgtggctgccttgcatggtggtttgccggcatctcgctcaccctttctgtccttca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgacgtggctgccttgcatggtggtttgccggcatctcgctcaccctttctgtccttca 804

                       
Query: 605 tctctcatggcc 616
           ||||||||||||
Sbjct: 805 tctctcatggcc 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_c21.g1 MSMg01no524_c21.g1 CHROMAT_FILE:
MSMg01no524_c21.g1 PHD_FILE: MSMg01no524_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:22 2005
         (436 letters)



>mm_chr13_96366558_96367393
          Length = 836

 Score =  843 bits (436), Expect = 0.0
 Identities = 436/436 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttataggccaggctgacttcagactcacagagatccgcctgcttctgcctcccgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tctttataggccaggctgacttcagactcacagagatccgcctgcttctgcctcccgagt 544

                                                                       
Query: 61  gctgagattaaaggtgtgtgccaccactgcctggctaggattcatacttttgatccctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gctgagattaaaggtgtgtgccaccactgcctggctaggattcatacttttgatccctca 484

                                                                       
Query: 121 ggtcggccggcctcccaggcagagggattgaaggtagacaccaccacacccactacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggtcggccggcctcccaggcagagggattgaaggtagacaccaccacacccactacactg 424

                                                                       
Query: 181 gggcagtttgtaaagcagcagcaacctgtgcttagctcggcttaattcatgtgtttgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gggcagtttgtaaagcagcagcaacctgtgcttagctcggcttaattcatgtgtttgagg 364

                                                                       
Query: 241 caatacctatcttcctgagagttccctcccttgcagaggtttagtctgttgctatgtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caatacctatcttcctgagagttccctcccttgcagaggtttagtctgttgctatgtatt 304

                                                                       
Query: 301 gtaatgctaagcgcaggcccccaaggcctggttgccacagagatgagagagtctgcacgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtaatgctaagcgcaggcccccaaggcctggttgccacagagatgagagagtctgcacgt 244

                                                                       
Query: 361 agacacataagagtgatgctatatgaccttgcccccaagttacttctgattggtgaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agacacataagagtgatgctatatgaccttgcccccaagttacttctgattggtgaataa 184

                           
Query: 421 cgatgctgggcagaag 436
           ||||||||||||||||
Sbjct: 183 cgatgctgggcagaag 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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