Query= MSMg01no524_f07.b1 MSMg01no524_f07.b1 CHROMAT_FILE:
MSMg01no524_f07.b1 PHD_FILE: MSMg01no524_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:34 2005
(649 letters)
>mm_chr13_37118229_37119276
Length = 1048
Score = 1038 bits (537), Expect = 0.0
Identities = 619/655 (94%), Gaps = 19/655 (2%)
Strand = Plus / Minus
Query: 8 gaattcctgtgtaaagcaaaggggtttggcgagttttgcaaggagatgtctacatgtctt 67
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 653 gaattcctgtgtaaagaaaaggggtttggggagttttgcaaggagatgtctacacgtctt 594
Query: 68 caa-gctcacaattgtccttcctgaatgcatcaagtacctaggcagcttggaagaatgag 126
||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 593 caaggctcacagttgtccttcctgaatgcatcaagtacccaggcagc-tggaaaaatgag 535
Query: 127 gccaggctacctgactcaactttccctacatggaactccaagcatatgcacagaaaccaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gccaggctacctgactcaactttccctacatggaactccaagcatatgcacagaaaccaa 475
Query: 187 tccccctagtcactctcccaaactacatcatagaccttcctctgtgtgatcatatgcagg 246
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 t-cccctagtcactctcctaaactacatcatagaccttcctctgtgtgatcatatgcagg 416
Query: 247 aggggatgaagaaaggcacgagaggagctcacctttctccggggctagtatgtgttagac 306
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 415 aggggatgaagaaaggcacgagaggagctcacctttctccagggctagtatgtgttagac 356
Query: 307 aatctgtaagttcatgtcactcatagaatctcatgtcactatcatatatgtaagcctctg 366
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatctgtaagttcatgtcattcatagaatctcatgtcactatcatatatgtaagcctctg 296
Query: 367 ggtattgttgttaacctaacacatgattctgaaaaataagtgaatatatgcaatacatgc 426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 295 ggtattgttgttaacctaacacatgattctgtaaaataagtgaatatatgcaatatatgc 236
Query: 427 aacactatatgagtataaaacataattg----------tc-----tccaaaagacaggga 471
||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 235 aacactatatgagtagaaaacataattgatgtgtatattcctgactccaaaagacaggga 176
Query: 472 aaacttggaaattttagcatcaaaa-gaccagagtctgacacctagatggctcatttagg 530
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 175 aaacttggaaattttagcattaaaaagaccagagtctgacacctagatggctcatttagg 116
Query: 531 agccaaggatgtgtgaatctgattctgcctatgccagtggatgtggtcacatggtgtcac 590
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agccaaggatgtgtaaatctgattctgcctatgccagtggatgtggtcacatggtgtcac 56
Query: 591 acagaaatgttgcctttctttctagagcatgatcctcttcccctctccctgcctt 645
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 55 acagaaatgctgcctccctttctagagcatgatcctcttcccctctccctgcctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_f07.g1 MSMg01no524_f07.g1 CHROMAT_FILE:
MSMg01no524_f07.g1 PHD_FILE: MSMg01no524_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:34 2005
(596 letters)
>mm_chr13_36982924_36983919
Length = 996
Score = 1052 bits (544), Expect = 0.0
Identities = 583/596 (97%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 1 tgattctccctcagcctcatttgcattcggcctcttcaggcctgttgtgcagacagtacc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgattctccctcagcctcatttgcattctgcctcttcaggcctgttgtgcagacagtacc 260
Query: 61 aatcacaacaggtctatggtaagtgactgcacttcaagaacagaagagagagagaatgac 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aatcacaacaggtctatggtaagtgactgcatttcaagaacagaagagagagagaatgac 320
Query: 121 ataaacctccctagaggtagagggtctgacactctgttcctcaataggccctatacatat 180
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 321 ataaacctccctagaggtagagggtctgacattctgttcttcaataggccctatacatat 380
Query: 181 tcagctttgtgtgagcctcatcatggggtgctccatgtaccatctacacacaaccagatt 240
||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tcagctttgcgtgagcctcattgtggggtgctccatgtaccatctatacacaaccagatt 440
Query: 241 ttgagaagaagtggatgaggcaattctcattctgcttctgtaactggactgctggggtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagaagaagtggatgaggcaattctcattctgcttctgtaactggactgctggggtta 500
Query: 301 gagacctagctctccatcttgatgatgatgcaatcttgcatgagttttacagcaccttct 360
||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct: 501 gagacctagctctccatcttgatgatgatgcgatcttgcacgagttttacagc-ccttct 559
Query: 361 gcacttcagttttctcacatataaagtagaaacatttgtactgcttacctgtagggttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 gcacttcagttttctcacatataaagtagaaacatttgtactgcttacctgtaggtttta 619
Query: 421 ttgagtgttgaaagctcagttatatacgtgatactttgatagcagctgccagggtccagt 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 ttgagtgttgaaagctcagttatatatgtgatactttgatagcagctgccagggtccagt 679
Query: 481 atataagcaagcagagcagccatattgaatgccacacaatagccattagcttaaaaagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atataagcaagcagagcagccatattgaatgccacacaatagccattagcttaaaaagtg 739
Query: 541 gttcataagaaacaaagctcatctctcactcctgcccagtgtcccatctctggggc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttcataagaaacaaagctcatctctcactcctgcccagtgtcccatctctggggc 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
