BAC Information

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BAC

Clone NameMSMg01-525E12
Chromosome13 (Build37)
Map Location 67,283,015 - 67,283,670
singlet/doubletsinglet
Overlap geneRsl1
Upstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759
Downstream geneLOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525E12.T7 (MSMg01no525_e12.b1)MSMg01-525E12.TJ (MSMg01no525_e12.g1)
ACCAG595155AG595156
length759747
length of high quality
(start - end)
612 (34 - 645)656 (66 - 721)
definitionCHROMAT_FILE: MSMg01no525_e12.b1 PHD_FILE: MSMg01no525_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:50 2005CHROMAT_FILE: MSMg01no525_e12.g1 PHD_FILE: MSMg01no525_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCATAC
AGGATAGAAACCCTGCAAGTGTGATAAATGTGGCAAGGCCTTCCGCTTTC
CATCATTACTTTTAAAACACAAGATAAGTCATACAAACCAAAAACCCTAC
AAGTGTAAAATATGTGGAGATTTCCTCCGCTCTCAATCATCACTTCATGA
ACACAAGTTAATGCATAAAGGAGAGAAACTCTATAAGTGTGATGTATGTG
GCAAGGCCTTCGAATATCCATCAAGACTTTCAAAACATAAGAAAATTCAT
ACAAGAGAGAAACCATAAAAGTGTGAAGTAGGTGGCAATGCCATCCATTA
TCCATCAATACTTTCTTTCTTTTTTTTTTTAAATTTATTTTTTTATTAGG
TATTTTCCTCATTTACATTTTCAATGCTATCCCAAAAGTCCCCCATACCC
ACCCCCCATCAACACTTTCAAACTGTACGAAAATTCATACAAGAAAGAAA
CCATACAGTTGTGAAATGTGTGGCAAAGCCTTTGATTATCCATCAGGACC
TTAGAAACATAAGAAAGTTCAAACAGAAGAGAATCCCTACAAGTGTGAAG
TATGTGGCAAGGTCTTCAATTATCAGTGGCGACTTTACAAACATAACAAT
CCATGCAAGAGAGAAGTCCTACAAATTATGAAGTACGTGGTCTGACCTTC
TATTGTCCATAAGTACTTTCTGAAAGAGAATCCACACAGGTGAGAAACCC
TAAACTTGG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTCTGGAGAGAAACCCTACAAGTGTGAAGAATGT
GGGAAAAGCTTTAGCTTTCCCTCGTTCCTTAAGCAACATCAAAGACTTCA
TTGTAGAAAAAATGCCTTCAAGCATGAACAATGTGTCAACAGATTTCCCC
CTCCTCTACCCCTTCAGGAACATGAGCAAATCCGTACTGAAGAGAAACCC
TACAAGTGTGGAGAATGTTATAAAACCTTTCGTTATCACTCAGCCCTTAG
GATACACAAGGCAGTTCATACTGGAGAGAGACCTTACAAGTGTGAAGAGT
GTGGCAAATGTTTTTCCTCATCTTCCTGCCTTAAAAAACATCAAATACTT
CACTCTGAAGACAACCCCTACAAGTGTGAAGAATGTTATAAAGCCTTTCG
TAATCACTCAGCCCTTAGGATTCACAAGACAGTTCATACGGGAGAGAGAC
CTTACAAATGTCAGGAGTGTGGCAAATGCTATTCCTCACCTTCCTGCCTT
AAAAGACATCAAATACTTCACTCTAAATACAACCCCTACAAGTGTGAAGA
GTGTGGCAAATGTCTTTCCTCATCTTCCTGCCTTAAAACACATCAAACCC
TTCACTCTGAAGACAAACCCTACAAGTGTGAAGACTGCTCCAGATGTTTC
TGCTCATCTTCATCTCTTAGGCGACATCAAAAATTCCATTCTGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_e12.g1 MSMg01no525_e12.g1 CHROMAT_FILE:
MSMg01no525_e12.g1 PHD_FILE: MSMg01no525_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:50 2005
         (656 letters)



>mm_chr13_67282815_67283870
          Length = 1056

 Score = 1268 bits (656), Expect = 0.0
 Identities = 656/656 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctggagagaaaccctacaagtgtgaagaatgtgggaaaagctttagctttccctcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctggagagaaaccctacaagtgtgaagaatgtgggaaaagctttagctttccctcgt 260

                                                                       
Query: 61  tccttaagcaacatcaaagacttcattgtagaaaaaatgccttcaagcatgaacaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttaagcaacatcaaagacttcattgtagaaaaaatgccttcaagcatgaacaatgtg 320

                                                                       
Query: 121 tcaacagatttccccctcctctaccccttcaggaacatgagcaaatccgtactgaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaacagatttccccctcctctaccccttcaggaacatgagcaaatccgtactgaagaga 380

                                                                       
Query: 181 aaccctacaagtgtggagaatgttataaaacctttcgttatcactcagcccttaggatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccctacaagtgtggagaatgttataaaacctttcgttatcactcagcccttaggatac 440

                                                                       
Query: 241 acaaggcagttcatactggagagagaccttacaagtgtgaagagtgtggcaaatgttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaggcagttcatactggagagagaccttacaagtgtgaagagtgtggcaaatgttttt 500

                                                                       
Query: 301 cctcatcttcctgccttaaaaaacatcaaatacttcactctgaagacaacccctacaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcatcttcctgccttaaaaaacatcaaatacttcactctgaagacaacccctacaagt 560

                                                                       
Query: 361 gtgaagaatgttataaagcctttcgtaatcactcagcccttaggattcacaagacagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaagaatgttataaagcctttcgtaatcactcagcccttaggattcacaagacagttc 620

                                                                       
Query: 421 atacgggagagagaccttacaaatgtcaggagtgtggcaaatgctattcctcaccttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacgggagagagaccttacaaatgtcaggagtgtggcaaatgctattcctcaccttcct 680

                                                                       
Query: 481 gccttaaaagacatcaaatacttcactctaaatacaacccctacaagtgtgaagagtgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccttaaaagacatcaaatacttcactctaaatacaacccctacaagtgtgaagagtgtg 740

                                                                       
Query: 541 gcaaatgtctttcctcatcttcctgccttaaaacacatcaaacccttcactctgaagaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaaatgtctttcctcatcttcctgccttaaaacacatcaaacccttcactctgaagaca 800

                                                                   
Query: 601 aaccctacaagtgtgaagactgctccagatgtttctgctcatcttcatctcttagg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaccctacaagtgtgaagactgctccagatgtttctgctcatcttcatctcttagg 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)