BAC Information

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BAC

Clone NameMSMg01-525H11
Chromosome13 (Build37)
Map Location 95,759,070 - 95,912,257
singlet/doubletdoublet
Overlap geneWdr41, Pde8b
Upstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525H11.T7 (MSMg01no525_h11.b1)MSMg01-525H11.TJ (MSMg01no525_h11.g1)
ACCAG595296AG595297
length744824
length of high quality
(start - end)		710 (35 - 744)140 (67 - 206)
definitionCHROMAT_FILE: MSMg01no525_h11.b1 PHD_FILE: MSMg01no525_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:06 2005CHROMAT_FILE: MSMg01no525_h11.g1 PHD_FILE: MSMg01no525_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,911,897 - 95,912,257)(95,759,070 - 95,759,201)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAGAT
CTGCCTGTCTCTGTAAGCACAGACAATAAACATAGCTGGGTGGAATCCTG
TCCTGAGAGTACCATTCTGATCTTGCCTGGGCCTAAATTTACTCTGTCCC
AAGCTGAACTTGAGCTCAGGAATCTCCTTGCATTTGTGTTTGCCTGCATT
TGTATCTTTCTGACAAGCTGGCTCATAGTGTAGCTGCCTCTGTTCTTTTA
GGTCTGTGAAGCTCCTCATATAATTTATATTGCATCCTTATATTTTGCAT
AGTTGAGAAATTATGTATTTTTGAACTCCTGTTTTCAGAGTTTTTTCCCA
CAGCCTTAAGGGCTGTCCTGAAGGTCACACCATTTACCATGTTTGCTAAG
GACACAGATACACTCTTGCCTCCTGTCTCTGATTATCATGGAGTCATTAA
CCTTGGAGACAGGACATTCCCTGATAACATTGACAGGGAGACTATTTCCT
AAAGAATGAACAAAAGATATATATTACAAACAAGTCTCTTGCCCAGCAGC
AGTCTGGCTCTGCTCCAGGGGTGGGAAACCATGCTGGAAATATCTATCTA
CAACTCTCTGCCTGGTGGCTTCAGGAAGGATCAAGGTGTGGTTTGCCAGA
GGAAGCTGAACTTGCCTAGAGGGTTCCCTGGTTAGCTTTTTCCAAATCCC
CATAAGCAGAATGTTAAAGTGCTAGGGTAAATGCTGTATTGTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGACTAACTGGTTCTCATAGGAGTAGCTAAGGG
AACAAAATCAGTTAATAGCGTGAGGTGCCAAGGAATTTAGCTGGGACTGC
TGCGTCTGCAGACATTGAAGCCAGGGAGAGGGGGAGGGGGAGGGGAGGGG
AGGATTTTNTTGGTCCTCTTGTTTTGCTTCCTTGGTTGGTTCTTTTTTGT
CCTTTTTTCTTTCCTGGTTTTCCCTTTTCTTCTTTTCTTTCTTTCCCGTG
CTTTTCTTTTTTTCTTTTTTCCCTGTTTCTTTTTTGGTCGTCTTTCTTCC
TTTCCCTCCTTTTTTTTTTCTCTCTTGTTTTCTTTTTTTTTTTCTCTCTT
TCCCCTCTTCTTGTCCTCCTCTTTTTCTTCCCTCTTTTTTTTTTTTTTTT
TCTTATTCTTTTTCTCTTCTCGTATTTCCTCTTCTTTTTTCCTTCGTTCT
CCGCTGTTCTCCTTTTCACCTTTTCTTGTTTTTCCCCCTCCCTCCTTTCT
TTTTTCCCTTCTCCTCTTCCCCCTTTTCTTTTTCCCTTGTCCCCCTTTTT
CCGTTTTCTCCTCCTGTTCTCCTCTTAATTCGTTCTCTCTATTTTGTTTC
TGGTTCTTACTTGACTCGTATTTTTCCCCCTGTTTCCTCCTCCTTTTTTT
CTTTTTTTTTCCTTCCTTTCTTCTTTTTTTTGCTCTTGCTCCCTCTTTTT
TTTTCCCCTCCGTCGTTGTTCTTGCCCCCCCATTATATCTATTTCTTTTT
TTCCCCTTTCTCTTTTCCGACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_h11.b1 MSMg01no525_h11.b1 CHROMAT_FILE:
MSMg01no525_h11.b1 PHD_FILE: MSMg01no525_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:06 2005
         (710 letters)



>mm_chr13_95911148_95912257
          Length = 1110

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Minus

                                                                        
Query: 350  ttaccatgtttgctaaggacacagatacactcttgcctcctgtctctgattatcatggag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 ttaccatgtttgctaaggacacagatacactcttgcctcctgtctctgattatcatggag 1051

                                                                        
Query: 410  tcattaaccttggagacaggacattccctgataacattgacagggagactatttcctaaa 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 tcattaaccttggagacaggacattccctgataacattgacagggagactatttcctaaa 991

                                                                        
Query: 470  gaatgaacaaaagatatatattacaaacaagtctcttgcccagcagcagtctggctctgc 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  gaatgaacaaaagatatatattacaaacaagtctcttgcccagcagcagtctggctctgc 931

                                                                        
Query: 530  tccaggggtgggaaaccatgctggaaatatctatctacaactctctgcctggtggcttca 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  tccaggggtgggaaaccatgctggaaatatctatctacaactctctgcctggtggcttca 871

                                                                        
Query: 590  ggaaggatcaaggtgtggtttgccagaggaagctgaacttgcctagagggttccctggtt 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  ggaaggatcaaggtgtggtttgccagaggaagctgaacttgcctagagggttccctggtt 811

                                                                        
Query: 650  agctttttccaaatccccataagcagaatgttaaagtgctagggtaaatgctgtattgtg 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  agctttttccaaatccccataagcagaatgttaaagtgctagggtaaatgctgtattgtg 751

             
Query: 710  a 710
            |
Sbjct: 750  a 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no525_h11.g1 MSMg01no525_h11.g1 CHROMAT_FILE:
MSMg01no525_h11.g1 PHD_FILE: MSMg01no525_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:06 2005
         (140 letters)



>mm_chr13_95758870_95759409
          Length = 540

 Score =  248 bits (128), Expect = 1e-70
 Identities = 131/132 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagactaactggttctcataggagtagctaagggaacaaaatcagttaatagcgtgaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagactaactggttctcataggagtagctaagggaacaaaatcagttaatagcgtgaggt 260

                                                                       
Query: 61  gccaaggaatttagctgggactgctgcgtctgcagacattgaagccagggagagggggag 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gccaaggaatttagctgggactgctgtgtctgcagacattgaagccagggagagggggag 320

                       
Query: 121 ggggaggggagg 132
           ||||||||||||
Sbjct: 321 ggggaggggagg 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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