Query= MSMg01no525_k17.b1 MSMg01no525_k17.b1 CHROMAT_FILE:
MSMg01no525_k17.b1 PHD_FILE: MSMg01no525_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:22 2005
(690 letters)
>mm_chr13_109890850_109891937
Length = 1088
Score = 1133 bits (586), Expect = 0.0
Identities = 645/686 (94%), Gaps = 34/686 (4%)
Strand = Plus / Plus
Query: 5 gaattcacctagggtggttgttaaaattgtagattctggagccatactccagagatggtg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcacctagggaggttgttaaaattgtagattctggagccatactccagagatagtg 264
Query: 65 actcagtgagtttgaagaggcccctaatctccatcttaactatgatcagtgtgattctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcagtgagtttgaagaggcccctaatctccatcttaactatgatcagtgtgattctga 324
Query: 125 tttaagaggtcttcagaccacaatttgaataatactaaatttgaagactgtcacaataat 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tttaagaggtcttcagaccacaatttgaataatactaaatttaaagactgtcacaataat 384
Query: 185 ctaggagtggagtggtcaaagtttgtaatataattttagactacagatggaaaaaaaaaa 244
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ctaggagtggagtggtcaaagtttgtaatataattttagactacagat--aaaaaaaaaa 442
Query: 245 ggaagcataagatctagacatgtttgagtacataaaatcaaagggaggaagtggtcaagt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 443 ggaagcataagatctagacatgtttgagtacataaaatcaaagggaggaagtggtctagt 502
Query: 305 acaaaattaatgtgtctaattcaacatggtcaatgtgtttgcttatctaatttgacttgt 364
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acgaaatgaatgtgtctaattcaacatggtcaatgtgtttgcttatctaatttgacttgt 562
Query: 365 tcacttatatgtcaatgaatatatatattatgtctaagtgagaaatgaagaaattataat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcacttatatgtcaatgaatatatatattatgtctaagtgagaaatgaagaaattataat 622
Query: 425 atgaactaagatacatataaataaaaatacatatgaactaatatacttgtaaatataaat 484
||||||||| |||||||||||||||||||
Sbjct: 623 atgaactaa--------------------------------tatacttgtaaatataaat 650
Query: 485 acatatgaattaatatacatgtaaataaaaatagaaacccggtttcaaaatgcccccgtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acatatgaattaatatacatgtaaataaaaatagaaacccggtttcaaaatgcccccgtc 710
Query: 545 atattcacagatcactgtggtgcttgcttagctttgcacatcgtgggtttcatcttgaat 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 711 atattcacagatcactgtggtgcttgcttagctttgcacatcatgggtttcatcttgaat 770
Query: 605 cttcagtaaagatttttgggctgctttttatcattagcttttcaaactgtatgaaggttg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cttcagtaaagatttttgggctgctttttatcattagcttttcaaactgtatgaaggttg 830
Query: 665 ctcagttataaaaagcatccctgttt 690
||||||||||||||||||||||||||
Sbjct: 831 ctcagttataaaaagcatccctgttt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1088
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1078
Effective search space: 733040
Effective search space used: 733040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_k17.g1 MSMg01no525_k17.g1 CHROMAT_FILE:
MSMg01no525_k17.g1 PHD_FILE: MSMg01no525_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:22 2005
(490 letters)
>mm_chr13_109991126_109992016
Length = 891
Score = 926 bits (479), Expect = 0.0
Identities = 488/491 (99%), Gaps = 1/491 (0%)
Strand = Plus / Minus
Query: 1 agaaattcgcctgcctctgcctcccaagtgctggattaaaggcatgtgccaccatgcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 agaaattcgcctgcctctgcctcccaagtgctggattaaaggcatgtgccaccatgcctg 824
Query: 61 ggtgaattttttttttcaatctggataactccaaagtaaataaaaagggaacaaatgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ggtgaattttttttttcaatctggataactccaaagtaaataaaaagggaacaaatgaat 764
Query: 121 aaagaaaagagtgacattctaatagaattatataatatataaaaatatattacattttat 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 763 aaagaaaagagtgacattctaatagaattatataatatataaaaatatgttacattttat 704
Query: 181 taaatatataatcggactatgtagtttaaatt-ggtacagaccaccatctttaggactca 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 703 taaatatataatcggactatgtagtttaaattaggtacagaccaccatctttaggactca 644
Query: 240 aacatttataacacagtgtgctacctttactggctgtcaagctgtggcccctcccactct 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aacatttgtaacacagtgtgctacctttactggctgtcaagctgtggcccctcccactct 584
Query: 300 ctccatggttggctgatgctccactggtctatgttgtgttactacactgctttgcaactt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctccatggttggctgatgctccactggtctatgttgtgttactacactgctttgcaactt 524
Query: 360 gggcctcagaggttcttggagctttcaaaacaaagttcatctctcagctaagactaataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gggcctcagaggttcttggagctttcaaaacaaagttcatctctcagctaagactaataa 464
Query: 420 aatcaaactcatatctctcacatccctgtttaatgccttcctgtgtgattctctaatttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatcaaactcatatctctcacatccctgtttaatgccttcctgtgtgattctctaatttg 404
Query: 480 taggctgcagc 490
|||||||||||
Sbjct: 403 taggctgcagc 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
