BAC Information

Click to search

BAC

Clone NameMSMg01-526G23
Chromosome13 (Build37)
Map Location 119,167,064 - 119,167,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382807, Hcn1, LOC100041695, LOC674926
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526G23.T7 (MSMg01no526_g23.b1)MSMg01-526G23.TJ (MSMg01no526_g23.g1)
ACCAG596030AG596031
length734730
length of high quality
(start - end)
586 (41 - 626)620 (70 - 689)
definitionCHROMAT_FILE: MSMg01no526_g23.b1 PHD_FILE: MSMg01no526_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:21 2005CHROMAT_FILE: MSMg01no526_g23.g1 PHD_FILE: MSMg01no526_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGGACCTATAGCACACACTGATTTCATCTGACAACACACGGCCTACCT
GCAAGCCTGAAGGTTGGAATTTCAACATGTAAGTTGGGGGTGGAAATAAA
CACTCAGGCCTCAGTTATGGTCTATCAACGTGCCTCTTTAAAAAAAAATA
AATAAATAAGAATTTCAAGTTTGGTATTTGTTTCCAGAAACCAACAACTT
GGAACAAGCTAAAGCAAACATACGATGAAAGTTTTGTGAATTTTAAATAG
CAAGTATACTTTTAAAATGGCTTTTCAAACATAATGAAGTTGTTTAGAGG
TAAAACTGATGGCTCCTTAGTGACGTTTACCCAACAAATCTGTTTCAGAG
GTGCATGTAGCTAAGGCTAGCCTTGAATTGCTCTTGCCTTCAAATTAAAG
GAAGGTATTTCTACACCTTTTCTTACTAAAATAATTATTTTAAAATAATT
ATTTAAAATAATAATTGTTTCTTACTAAAATAATTATTGTCCTGATTACA
AAAATATTTTTCCTGAGAGAACTGACAAGTTATGGAGAAAATTATCTAAA
AGCTTACTCCCTTCATCATCTAATGCCACCTAGGGGGGACTAAAAGAACA
GAGACCAGAATAAAATTTGGAGGGTTGTCAATATTTGAAGGTAGAACAGC
GGGGTGGGGGGGAAGGGTTGTTAAAAAGAATATC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTAAAAATTATAATTTTAGGAAAGCAGTA
CTAATAGGGTCTCTTCTAGGGTCTATGACCTTACCAGCCACATATACATA
GTTGAATTTACAGTATTAGGCATGACTCTCTCTCCTCCCAAAAACATACA
TGATAATTGAGTGGGCCATAAGTCCAATTAGATGTCTGTTGGATATCCCC
CAAGGTATAAGAGCCATTGTTTCATTCTTGAGGGTATCTTTCCATGCTGC
AGGTTGTTGTGATTCATAGCTTTTATACTTAAGACTCAATAAATAAATTC
TGTAAAAGAATGGTAGGGAGATTGTAAGAGACAGAGGACAAGGACATCAG
CTGTGGGATAGTGTCTTCTCTATATGGCAGGGAAAATGCACTAATGAAAT
CCAAATAACATGGCTGCCTAAAAAAGACCAGAACAGCAACACTGGTTTAC
ATGACAATGTGAGTGGGAGAAATATCACATGGCCCCACTGCAGGCTATTG
AGGGCTGCTGAGAGAGGGATTCTTCACAGACAAGATTCCTGATAAACTAT
CCAATCCCAAGTGGTCCCCTTTAAACACACACATGTATTTTTATACACAC
ACACACACACACACACACACACACACACACACACACACGAAGCATGCATG
CACACACACATGCATATAGATTTGGAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_g23.b1 MSMg01no526_g23.b1 CHROMAT_FILE:
MSMg01no526_g23.b1 PHD_FILE: MSMg01no526_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:21 2005
         (586 letters)



>mm_chr13_119166860_119167845
          Length = 986

 Score = 1125 bits (582), Expect = 0.0
 Identities = 582/582 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggacctatagcacacactgatttcatctgacaacacacggcctacctgcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggacctatagcacacactgatttcatctgacaacacacggcctacctgcaa 264

                                                                       
Query: 65  gcctgaaggttggaatttcaacatgtaagttgggggtggaaataaacactcaggcctcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctgaaggttggaatttcaacatgtaagttgggggtggaaataaacactcaggcctcag 324

                                                                       
Query: 125 ttatggtctatcaacgtgcctctttaaaaaaaaataaataaataagaatttcaagtttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatggtctatcaacgtgcctctttaaaaaaaaataaataaataagaatttcaagtttgg 384

                                                                       
Query: 185 tatttgtttccagaaaccaacaacttggaacaagctaaagcaaacatacgatgaaagttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttgtttccagaaaccaacaacttggaacaagctaaagcaaacatacgatgaaagttt 444

                                                                       
Query: 245 tgtgaattttaaatagcaagtatacttttaaaatggcttttcaaacataatgaagttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgaattttaaatagcaagtatacttttaaaatggcttttcaaacataatgaagttgtt 504

                                                                       
Query: 305 tagaggtaaaactgatggctccttagtgacgtttacccaacaaatctgtttcagaggtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaggtaaaactgatggctccttagtgacgtttacccaacaaatctgtttcagaggtgc 564

                                                                       
Query: 365 atgtagctaaggctagccttgaattgctcttgccttcaaattaaaggaaggtatttctac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtagctaaggctagccttgaattgctcttgccttcaaattaaaggaaggtatttctac 624

                                                                       
Query: 425 accttttcttactaaaataattattttaaaataattatttaaaataataattgtttctta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accttttcttactaaaataattattttaaaataattatttaaaataataattgtttctta 684

                                                                       
Query: 485 ctaaaataattattgtcctgattacaaaaatatttttcctgagagaactgacaagttatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctaaaataattattgtcctgattacaaaaatatttttcctgagagaactgacaagttatg 744

                                                     
Query: 545 gagaaaattatctaaaagcttactcccttcatcatctaatgc 586
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagaaaattatctaaaagcttactcccttcatcatctaatgc 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)