BAC Information

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BAC

Clone NameMSMg01-526J07
Chromosome13 (Build37)
Map Location 65,038,199 - 65,038,793
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301
Downstream geneLOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526J07.T7 (MSMg01no526_j07.b1)MSMg01-526J07.TJ (MSMg01no526_j07.g1)
ACCAG596138AG596139
length835742
length of high quality
(start - end)		206 (36 - 241)595 (67 - 661)
definitionCHROMAT_FILE: MSMg01no526_j07.b1 PHD_FILE: MSMg01no526_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:33 2005CHROMAT_FILE: MSMg01no526_j07.g1 PHD_FILE: MSMg01no526_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGGC
ACATGCCTCAATATAAAAGCAATATACAGAAAACCATCCGGGCGTGATGG
CGCACGCCTTTGATCACAGCACTCGGGAAGCAGAGGCAGGCAGATTTCTG
AGTTCGAGGCCAGCATGGTCTACAAAGTGAGTTCCAGAACAGCCAGAGCT
ATACAGAGAAACCCTGTCTCGAAAAACCAANAAAGAAAGGGGGGGNGNGN
GGNGNGNTGTGNNTAAAAAANAAAAAAAAAAAAAAAAGGGGGAAAAAAAA
TGACGCCCCCAATAATTTGGGGGGGAGAAAAAGGNTAGCCCTTCCTAATA
AAAATNTCCANCAGATTTTTTTTTCCCCGCCTTATAGTNTAGAGGGTTGA
GNTTATTGTTTTTGCTTAGTGTGCGTGTGCCGCGGGGTGTTGTTTTTTTT
GTTTTGGTGGTTTTGGACGAAGGGTTGATCTCACCGATTACGGATTTCTA
GTTGTATGTTTATGGTTTCGTAATTCATTTCTTCTTTCCGCTTCCGAGAG
ATATCTAGGATCTTTACTATCACGCTTTTTTGTTTTTAGTTGTTTAGGAG
GAATTTATGTTCGCCTGTAATGGTGCGCGGGGATAACCGTCGAATGTTGC
GTTTCCATTAATTCTTTTCGTGTAGGATATAGTTTTTGTCTGGCCCTATT
TTGTTCTTTGCCTGATTTTGTGTTAGCGTTTTTTCAGATACGTCTTTTTT
TTCTGTCTTCCTATGATTTTATTTCGCTCTTCTTCCGTTTTTTTATTTTT
TTCGGCGCTCGGTTTTTTTATACATCTGCTCGATC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTATTCCCTCTCTCTCTTTCTCCCTTTTCCCTG
ACTGGGGAAGTCCAGCCTTATTTTCTCTTCTGACAAGCCATTGGATGATC
AGCTTTTATTGACAAGTCAGATAAAAAAAATGGGGGCCAACGCTTGCACA
AACTTGAAACAGGAGATACTTGGAATAAGCATTATAATTACATGTCCAGA
TTGCAACAAAATATGGAGTGAGAGAAATCAGTATTAAATAATATGTGAAT
AATCTTTACACAGTACAAACATGCCATCAGTCATCCACCATGTGTGAGGC
CTCTAAAATGTGTCTATTTTGTGTCTTGTGTATAGCACAACTTGGAACAT
GTTCTCTGTGTAAATGGTTCTGCTTCCTTCTAATTGTCTGTACAGACAGG
TATAGGCATGCTTTGGTTGGGTCTGCTTTGGGGGTTCTTATATCTACCAC
CCTTCTGATCCTTATTCCACTCTAATCCCTTCCAAAACCTTAACAGTAGG
TAGGAGAGAAGGAAGGTTAGAGGAGAAAGGGGGTGTAATATTTTTAGACT
ACCTCTTACTGATTATAGCTATCAAACTCCTTGGGGAAAATTCAATCTTC
ATCATCAGGGTATCAAATTTCTTTTTCCTGTCTCTTTGCTCACAACCCCT
TGATAAACCACAGCAGCAGGAACCAGCAGCAACAGCAGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_j07.g1 MSMg01no526_j07.g1 CHROMAT_FILE:
MSMg01no526_j07.g1 PHD_FILE: MSMg01no526_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:33 2005
         (595 letters)



>mm_chr13_65037842_65038836
          Length = 995

 Score = 1151 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttattccctctctctctttctcccttttccctgactggggaagtccagccttattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 cttattccctctctctctttctcccttttccctgactggggaagtccagccttattttct 893

                                                                       
Query: 61  cttctgacaagccattggatgatcagcttttattgacaagtcagataaaaaaaatggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 cttctgacaagccattggatgatcagcttttattgacaagtcagataaaaaaaatggggg 833

                                                                       
Query: 121 ccaacgcttgcacaaacttgaaacaggagatacttggaataagcattataattacatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ccaacgcttgcacaaacttgaaacaggagatacttggaataagcattataattacatgtc 773

                                                                       
Query: 181 cagattgcaacaaaatatggagtgagagaaatcagtattaaataatatgtgaataatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cagattgcaacaaaatatggagtgagagaaatcagtattaaataatatgtgaataatctt 713

                                                                       
Query: 241 tacacagtacaaacatgccatcagtcatccaccatgtgtgaggcctctaaaatgtgtcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tacacagtacaaacatgccatcagtcatccaccatgtgtgaggcctctaaaatgtgtcta 653

                                                                       
Query: 301 ttttgtgtcttgtgtatagcacaacttggaacatgttctctgtgtaaatggttctgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttttgtgtcttgtgtatagcacaacttggaacatgttctctgtgtaaatggttctgcttc 593

                                                                       
Query: 361 cttctaattgtctgtacagacaggtataggcatgctttggttgggtctgctttgggggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttctaattgtctgtacagacaggtataggcatgctttggttgggtctgctttgggggtt 533

                                                                       
Query: 421 cttatatctaccacccttctgatccttattccactctaatcccttccaaaaccttaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cttatatctaccacccttctgatccttattccactctaatcccttccaaaaccttaacag 473

                                                                       
Query: 481 taggtaggagagaaggaaggttagaggagaaagggggtgtaatatttttagactacctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taggtaggagagaaggaaggttagaggagaaagggggtgtaatatttttagactacctct 413

                                                                  
Query: 541 tactgattatagctatcaaactccttggggaaaattcaatcttcatcatcagggt 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tactgattatagctatcaaactccttggggaaaattcaatcttcatcatcagggt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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