BAC Information

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BAC

Clone NameMSMg01-526J15
Chromosome13 (Build37)
Map Location 110,467,106 - 110,467,766
singlet/doubletsinglet
Overlap genePde4d
Upstream geneLOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526J15.T7 (MSMg01no526_j15.b1)MSMg01-526J15.TJ (MSMg01no526_j15.g1)
ACCAG596154AG596155
length724728
length of high quality
(start - end)
668 (38 - 705)661 (68 - 728)
definitionCHROMAT_FILE: MSMg01no526_j15.b1 PHD_FILE: MSMg01no526_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:34 2005CHROMAT_FILE: MSMg01no526_j15.g1 PHD_FILE: MSMg01no526_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
ATAATTTCAGAGACACCGAATCTTATAGAGAAGAAAGTGGGGAGAAGCCT
CGAAGATATTGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGTTCT
ATTCAGTGCTGTAAGTGCTGTAAGATCGAGAATTGACAAATGGGACCTCA
TAAAATTGCAAAGCTTCTGCAATGCAAAAGACACTGTCAATAAGAGAAAA
AGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAG
GGGACTAATACTCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAA
AATCAAATAACCCCATTAAAAATAGGGCTCAGAGCTAAACAAAGAATTCT
CACCTGAGGAATACTGAATGGCTGAGAAACACCTGAAAAAATGTTCAACA
TCCTTAATCACCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAATCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGAGGATGTGGAGAAAGAGGAACACTTCTCCATTGTTGGTGGGATTGC
AAGCTTGTACAACCACTCTGAAAATCAGTCTGGCTGTTCCTCAGAAAATT
GGACATGGTACTACCGGAGGATCCCACAATACCTCTCCTGGGCATATATC
CAGAAGATGTTCAAACCAGTAAGT
GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCATCACTGTGGCCACCCAAGTGTCTTCTCAGG
ACAGATAACTGTTAACAATAACTAGTGCCTTCGTTTACGAGTAGCTAGGG
CAGATGAAGATAAACTTAGTGATTCTGGAGTGGATAAGCACACTGAAGGG
AGTGTTGTACAGATATGTAGGGGAGGAGAATCCTAAGTAAATTCCTGAGG
AATAATAGAGGCAAAAGCCAGAAGGCTAACCCTGTCAGGGAAGGGCAAAC
ACACCTCTGAAAAGAATCGTGGTGGAGGGGACAGCTTGTGCATCAGCCTG
ACAAAACCTTTTAACAGAGAGGTGGGTGGCTACTTCCCAGGAACATTCAT
TCAAAACTAATCCCAGGCGTGAGGCTGAAATGGTGGCCACACCCACAAAG
GGGGCCGGAAGTTACTCTGTAAGAAATAATGCACTTTTTTTTTTATCAGA
AAATCGAATACATTATTATAGTTTATGTCTTTGAAAGATAACCCAATTTT
GGAAATAAACTTTTGATGAAGAAGGGAAAGCAGGACAACTATACCTGATT
CGTTCTGTAAAGGTAGCCAGGACGTTTGGATACAAACTAGGATGAAAATG
TAAGAATGATTTCTAACTCAACTCTTAATCCAGTGTTTGTGCGAAATAGC
ATCGCTTTCTTTAAGTTTTCAATCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_j15.g1 MSMg01no526_j15.g1 CHROMAT_FILE:
MSMg01no526_j15.g1 PHD_FILE: MSMg01no526_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:34 2005
         (661 letters)



>mm_chr13_110466906_110467966
          Length = 1061

 Score = 1241 bits (642), Expect = 0.0
 Identities = 657/662 (99%), Gaps = 2/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatcactgtggccacccaagtgtcttctcaggacagataactgttaacaataactagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcactgtggccacccaagtgtcttctcaggacagataactgttaacaataactagtg 260

                                                                       
Query: 61  ccttcgtttacgagtagctagggcagatgaagataaacttagtgattctggagtggataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcgtttacgagtagctagggcagatgaagataaacttagtgattctggagtggataa 320

                                                                       
Query: 121 gcacactgaagggagtgttgtacagatatgtaggggaggagaatcctaagtaaattcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacactgaagggagtgttgtacagatatgtaggggaggagaatcctaagtaaattcctg 380

                                                                       
Query: 181 aggaataatagaggcaaaagccagaaggctaaccctgtcagggaagggcaaacacacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaataatagaggcaaaagccagaaggctaaccctgtcagggaagggcaaacacacctc 440

                                                                       
Query: 241 tgaaaagaatcgtggtggaggggacagcttgtgcatcagcctgacaaaaccttttaacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaagaatcgtggtggaggggacagcttgtgcatcagcctgacaaaaccttttaacag 500

                                                                       
Query: 301 agaggtgggtggctacttcccaggaacattcattcaaaactaatcccaggcgtgaggctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaggtgggtggctacttcccaggaacattcattcaaaactaatcccaggcgtgaggctg 560

                                                                       
Query: 361 aaatggtggccacacccacaaagggggccggaagttactctgtaagaaataatgcacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 aaatggtggccacacccacaaagggggccggaagttactctgtaagaaatagtgcacttt 620

                                                                       
Query: 421 tttttttatcagaaaatcgaatacattattatagtttatgtctttgaaagataacccaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttttatcagaaaatcgaatacattattatagtttatgtctttgaaagataacccaat 680

                                                                       
Query: 481 tttggaaataaacttttgatgaagaagggaaagcaggacaactatacctgattcgttctg 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 681 tttggaaataaacttttgatgaagaaaggaaagcaggacaactatacctgattggttctg 740

                                                                       
Query: 541 taaaggtagccaggacgtttggatacaaactaggatgaaaatgtaagaatgatttctaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaggtagccaggacgtttggatacaaactaggatgaaaatgtaagaatgatttctaac 800

                                                                       
Query: 601 tcaactcttaatccagtgtttgtgcgaaatagcatc-gctttctttaagttttcaatctg 659
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 801 tcaactcttaatccagtgtttgtgcgaaatagca-ctgctttctttaagttttcaatctg 859

             
Query: 660 ct 661
           ||
Sbjct: 860 ct 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)