BAC Information

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BAC

Clone NameMSMg01-526N05
Chromosome13 (Build37)
Map Location 118,442,308 - 118,442,957
singlet/doubletsinglet
Overlap geneHcn1
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526N05.T7 (MSMg01no526_n05.b1)MSMg01-526N05.TJ (MSMg01no526_n05.g1)
ACCAG596325AG596326
length753744
length of high quality
(start - end)
470 (36 - 505)650 (67 - 716)
definitionCHROMAT_FILE: MSMg01no526_n05.b1 PHD_FILE: MSMg01no526_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:52 2005CHROMAT_FILE: MSMg01no526_n05.g1 PHD_FILE: MSMg01no526_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGGC
AGAAGAATCTTGAATGCCCAAGATGTATGTAAAGAAATGTCTGAGATTCC
ATCTTATATCTATTAGAATGTGATCAAAACCTCAAGGAACAGCACAAACT
CGTGAGGATGTGGAGGAATTTCATAAAGACATAAAACTTGAAGCCATAAT
ATATGCACAAAGGACCTGTGGGATAAAAAGAGAGAAGAAAAAATATATAT
ACAAATTAAAAAGATAAAATGTTTAAATATGGAAGTTACAGAGACAAAGT
TTGGAGCTGAGACGAAAGGATGGACCATTTAGAGACTGCCATATCCGGGG
ATCCATCCCATAATCAGCTTCCAAACACTGACACCATTGCATACACTAGC
AAGATTTTGCTGAAAGGACCCAGATATGGCTGTCTCTTGTGAGTCTATGC
CGGGGCCTGGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGG
AACACAGCCCCCCCTCCCCCCCCATGGAGGAGCTAGAGAAAGTACCCCAA
GGAGCTGAAGGGATCTGCAATCCTATAGGGTGGAAAACCATTATTGAACT
AGCCCAATACCCCTCCCCCCCCCCGGTAACCTATTTTAATTTGNGTGTTT
TCTTAGTGGCATTTTAAATCCTAAAAAAATGGTCAATAAAAGGCTCATAC
GGAGTATAATATAATTTCTATAAAGGGTCTATATTGATCGCGCGGTTTCG
GCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTAATATATGAGTCTTCCAGGGGTTAGTAGGTT
TGATTCCATGAATGCTGAAGAATTGAAAGGACCATGGAGTGAAGCTAGGC
TTCCCACCAAAGAACAAAGTTAGAGTTCCTGAAACATGCCCAGGAGGTGC
TACTGGGAGAGGCACAGCCTCAATTGCAGTGCAGAGCCCAGGAGTTTTAA
GATCCCAGGACTGTTGGATGATCAGGGGTCATAGTGCCTGCTGTGAAACA
GAGCTGGTTAGAGTCTACAAGATAAGCTGCATATACTGTGGGTTTCAGAG
CTGGCGTTCCCCCAGCCCTTTTGGAACACAGAAGATTGTGATTCCAACGT
GCCACGCACTGAGCTACTGCATATTGCTGGTCCTTTGATTCGGTTGCAAC
TGTGTCTGGATTCCTCCTCCTTAGAGTAAGGAAGTGCTTAATATGGCCTT
TAAAGCTATTTTTACATTGTGATATTAGTATGAGATCTTGGAGATAAACA
AGAAAGGGAAATTTTCTAGTTTAATCACGGTCTGTTTGTGTGTCAAATTC
ACAAGGTATCAATTGTAGAGAGTTGATGTTTTTATCCATGTGGTTAGAGT
TATCTTAGAAGAGTACACATTGAGAAAATCCCTCCACTCAATTGGATTGA
GGCCATGTATGTGGGGCATTTTTTAAACTAATTATAGCTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_n05.g1 MSMg01no526_n05.g1 CHROMAT_FILE:
MSMg01no526_n05.g1 PHD_FILE: MSMg01no526_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:52 2005
         (650 letters)



>mm_chr13_118441978_118443027
          Length = 1050

 Score = 1141 bits (590), Expect = 0.0
 Identities = 635/650 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaatatatgagtcttccaggggttagtaggtttgattccatgaatgctgaagaattga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 980 actaatatatgagtcttccaggggttagtaggtttcattccatgaatcctgaagaattga 921

                                                                       
Query: 61  aaggaccatggagtgaagctaggcttcccaccaaagaacaaagttagagttcctgaaaca 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aaggaccatggagggaagctaggcttcccaccaaagaacaaagttagagttcctgaaaca 861

                                                                       
Query: 121 tgcccaggaggtgctactgggagaggcacagcctcaattgcagtgcagagcccaggagtt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tgcccaggaggtgctactgggggaggcacagcctcaattgcagtgcagagcccaggagtt 801

                                                                       
Query: 181 ttaagatcccaggactgttggatgatcaggggtcatagtgcctgctgtgaaacagagctg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttaagatcctaggactgttggatgatcaggggtcatagtgcctgctgtgaaacagagctg 741

                                                                       
Query: 241 gttagagtctacaagataagctgcatatactgtgggtttcagagctggcgttcccccagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttagagtctacaagataagctgcatatactgtgggtttcagagctggcgttcccccagc 681

                                                                       
Query: 301 ccttttggaacacagaagattgtgattccaacgtgccacgcactgagctactgcatattg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 ccttttggaacacagaagattgtgattccaacatgccacgcactgagctactgcatattg 621

                                                                       
Query: 361 ctggtcctttgattcggttgcaactgtgtctggattcctcctccttagagtaaggaagtg 420
           ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 620 ctgatcctttgattcgggtgcaactgtgtctggatttctcctccttagagtaaggaagtg 561

                                                                       
Query: 421 cttaatatggcctttaaagctatttttacattgtgatattagtatgagatcttggagata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttaatatggcctttaaagctatttttacattgtgatattagtatgagatcttggagata 501

                                                                       
Query: 481 aacaagaaagggaaattttctagtttaatcacggtctgtttgtgtgtcaaattcacaagg 540
           ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 500 aacaaaaaagggaaattttctagtttaatcgtggtctgtttgtgtgtcaaattcacaagg 441

                                                                       
Query: 541 tatcaattgtagagagttgatgtttttatccatgtggttagagttatcttagaagagtac 600
            |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 aatcaattgtacagagttgatgtttttatccatgtggttagagtcatcttagaagagtac 381

                                                             
Query: 601 acattgagaaaatccctccactcaattggattgaggccatgtatgtgggg 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acattgagaaaatccctccactcaattggattgaggccatgtatgtgggg 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)