TGGAAGGGTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAATATCTCCTGTTGCCCTCAGCATGGAAAAAAAGAA
AATGAGTTCATATTTAAATGGACCAGAAACAGTGGAGGAGACCGTTGGTA
GACTAGAAAAGAGCTGGTGTTCTCCTCCACCTCTCTCTCTCTCTCTCTCT
CTCTCACACACACACACACACACACACACACATGCATTCACATGAAATAG
CCCAGAGTTGTTACTTAACTTTTTGTGGATAGGAGCTATACCTTTCTCTG
AATCTCCCACAGTGCCTAGCATGGTTCTTGGAACAATTGACTTGAAAAGC
ATAGTTTCTATCTACCAAAACTACCCTGACTTTCCTAGCTCAGCACAACC
CACCACTTCCCTCACTACAGAGCAATTCTCTTCATCTCTGCCATTTTCAA
AGGCCAAATCCTACCTGCTCTGTGCTCTGTTGAGTTGAGCAACTGTAGTA
ATCTTTACTGAAGGTAATCTATTCACTCTTTTAACATAATTATCATCTCA
CATGCCTTTGATTCCAGCAGAGGCAGACACAGGCAGATGTCTGTGAATTC
AAGGGCAGCTTGGTCTACATAGCAAGTCCAGGACCAGCTAGGGCTATAGA
CTTAGAAGACCATCTTTCATAACAGTAAGAATGGAAGACACCCATACCCT
TTCACTTCTTTTGCTCACCCCCAATTCAGTGCTN

AAAANCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCTCCCTCCCCACTTG
TGATTGCTTTCTTTTCTCTCCCAAGTGGGACTGAGGCATCCTCACTTGGG
CACTTCAGCTTGTTGACCATTTTAAGTTCTGGAGACTGTATCTTGGGTAT
TCTGGGTTTTTTCTTTTGTTTTGTTTTTGGCTAATATCCACTTATTAGTG
AGTGCATATCATGTACATCCTTTTGGGTCTGAGGTACCTCACTCAGGATG
ATATTTTCTAGTTCCATTTATTTGCCTGCAAAAAAGAGAACTTCAGACCA
ATCTCACTTATGAATATCGATGCAAAAATACTCAATAAAATTCTTGCAAA
CTGAATCCAAGAACACATCAAAACCATTACCACAATCAAGTAGGCTTCAT
CCCAGGGATTCAAGGTTGGTTTGATATCCAAAAATCCATTAACATAATCT
ACTATATAAACAGACTCAGAGGAAAAAAATCACATGATCATCTCCTTAGA
TGCAGAAAAAGCATTTGACAAAATACAACACCCCTTCATGTTAAAAGTAT
TGGAGAGATCAGGAATTCAAGTCCCATACCCAAACATAATAAAAGCAATT
TACTGCAAACCAACAGCCAATATCAAATTAAATGGAGACATACTTGAAGC
AATCCCACTGAAATCAGGTACAAGACAAGGATGCCCACTCTCCCCA

Query= MSMg01no527_i05.b1 MSMg01no527_i05.b1 CHROMAT_FILE:
MSMg01no527_i05.b1 PHD_FILE: MSMg01no527_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:46 2005
         (486 letters)



>mm_chr13_29490516_29491399
          Length = 884

 Score =  855 bits (442), Expect = 0.0
 Identities = 469/486 (96%), Gaps = 15/486 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccctcagcatggaaaaaaagaaaatgagttcatatttaaatggaccagaaacagtgga 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tgccctcagcatgg-aaaaaagaaaatgagttcatatttaaatggaccagaaacagtgga 769

                                                                       
Query: 61  ggagaccgttggtagactagaaaagagctggtgttctcctccacctctctctctctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ggagaccgttggtagactagaaaagagctggtgttctcctccacctctctctctctctct 709

                                                                       
Query: 121 ctctctctcacacacacacacacacacacacacacatgcattcacatgaaatagcccaga 180
           ||||||||            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctctctct------------cacacacacacacacatgcattcacatgaaatagcccaga 661

                                                                       
Query: 181 gttgttacttaactttttgtggataggagctatacctttctctgaatctcccacagtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gttgttacttaactttttgtggataggagctatacctttctctgaatctcccacagtgcc 601

                                                                       
Query: 241 tagcatggttcttggaacaattgacttgaaaagcatagtttctatctaccaaaactaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tagcatggttcttggaacaattgacttgaaaagcatagtttctatctaccaaaactaccc 541

                                                                       
Query: 301 tgactttcctagctcagcacaacccaccacttccctcactacagagcaattctcttcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 tgactttcctagctcagcacaacccaccacttccctcactacagagcaactctcttcatc 481

                                                                       
Query: 361 tctgccattttcaaaggccaaatcctacctgctctgtgctctgttgagttgagcaactgt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 tctgccattttcaaaggccaaatcctacctgctctgtgctccgttgagttgagcaactgt 421

                                                                       
Query: 421 agtaatctttactgaaggtaatctattcactcttttaacataattatcatctcacatgcc 480
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 420 agtaatctttactgaaggtaatctattcactc--ttaacataattatcatctcacatgcc 363

                 
Query: 481 tttgat 486
           ||||||
Sbjct: 362 tttgat 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space:   416024
Effective search space used:   416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)