Query= MSMg01no527_i19.b1 MSMg01no527_i19.b1 CHROMAT_FILE:
MSMg01no527_i19.b1 PHD_FILE: MSMg01no527_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:49 2005
(670 letters)
>mm_chr13_35527720_35528789
Length = 1070
Score = 1108 bits (573), Expect = 0.0
Identities = 648/679 (95%), Gaps = 12/679 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcactctctgctggtagaaggataaactgattaaaaaaatattttggaaaata 63
||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 203 ggaattctcactcactgctggtagaaggataaactgatttaaaaaatactttggaaaata 262
Query: 64 gtctggtattatctaataaggatcaaaatagtat-tcctaggaggaagtggaacctctgt 122
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 263 gtctggtattatctaataaggatcaaaacagtatgtcctaggaggaagtggaacctctgt 322
Query: 123 ctacagcaagctaacatgatctgcaaattctaattccagaaatcaagagtggaactgatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 ctacagcaagctaacatgatctgcaaattctaattccagaaatcaagagtggagctgatg 382
Query: 183 aaatcagagtgctgtgtgttcagtaatgagctgggacggccctgggatatcatatctgct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaatcagagtgctgtgtgttcagtaatgagctgggacggccctgggatatcatatctgct 442
Query: 243 tgactttcagcctctttaagcaaaatctaaagacaaaagcagagttgtaaccaccatgga 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 tgactttcagcctctttaagcaaaacctaaagacaaaagcagagttgtaaccaccatgga 502
Query: 303 tgagcacaaagaattggaaaatgtaccaatttctggtattgcagaagcactttgctcaat 362
||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 503 tgatcacaaagaattggaaaacgcaacaatttctggtattgcagaagcactttgctcaat 562
Query: 363 ttagctggtactacacttgtcaggaaactacttcaggggaacatgtgtgacaaaggtgca 422
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct: 563 ttagctggtactacacttgccaggaagctacttcaggggaacatgtgtggcaaaggtgca 622
Query: 423 tgattataggactgaatcatagaacactaaagactatagggcatgatggtgcatgccttt 482
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 623 tgattataggactgaatcatagaacactaaagactatagggcatggtggtgcatgctttt 682
Query: 483 aatcccaatactcatgaggcaggtgtaggcagatctctgggagttcaagaccagccagat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatcccaatactcatgaggcaggtgtaggcagatctctgggagttcaagaccagccagat 742
Query: 543 ctacattgctagttctatattacatagtgagaccttgtctcaaaaaaaaaaaaa---tgg 599
|||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct: 743 ctacattgctggttctatattacatagtaaggccttgtctcaaaaaaaaaaaaaaaatgg 802
Query: 600 agacatagacaagtgaagttttcatttgaatttttattaaatatgtgtgtgtgt------ 653
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 803 agacatagacaagtgaagtttttatttgaatttttattaaatatgtgtgtgtgtttgtgt 862
Query: 654 --gtttgtgtgtgtgtggt 670
|||||||||||||||||
Sbjct: 863 gtgtttgtgtgtgtgtggt 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_i19.g1 MSMg01no527_i19.g1 CHROMAT_FILE:
MSMg01no527_i19.g1 PHD_FILE: MSMg01no527_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:49 2005
(529 letters)
>mm_chr13_35695941_35696869
Length = 929
Score = 955 bits (494), Expect = 0.0
Identities = 503/506 (99%)
Strand = Plus / Minus
Query: 1 atctgtttccacctttctggttctttttaccattgattctggggtttgaactcaagcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 715 atctgtttccacctttctggttctttttaccattgattctggggtttgaactcaaccctt 656
Query: 61 catgcttgcaactaagctagctccctggtcccctggccccttttctcagccctccaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 catgcttgcaactaagctagctccctggtcccctggccccttttctcagccctccaacag 596
Query: 121 cctatggatatggatcctaacactgatttttctcttcccactcttccacatgcaccgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cctatggatatggatcctaacactgatttttctcttcccactcttccacatgcaccgagc 536
Query: 181 ttgatttctgacagtctgtacaggcccaagaaaggacgtacagtccctgactggtgtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 535 ttgatttctgacagtctgtacaggcccaagaaaggacgtacagtccctgtctggtgtctt 476
Query: 241 agctggagaaatactgacttaagaactcatgctcatagactctgaaaccacagtggctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agctggagaaatactgacttaagaactcatgctcatagactctgaaaccacagtggctta 416
Query: 301 aaatcaagcacatctgtgatatcggaggtgcctcagaagtgggtgggaggcagtgctgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 415 aaatcaagcacatctgtgatatcggaggtgcctcagaagtgggtgggaggcagtggtgtc 356
Query: 361 ctctgactcacatggtcagtaaggatgagaggttctggtgctgtgtggctacaagcatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctctgactcacatggtcagtaaggatgagaggttctggtgctgtgtggctacaagcatgc 296
Query: 421 cattggtgttgacatccaaaccaggagagagagagagagagagagagagagagagagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cattggtgttgacatccaaaccaggagagagagagagagagagagagagagagagagaga 236
Query: 481 gagagagagagagagagagagagaga 506
||||||||||||||||||||||||||
Sbjct: 235 gagagagagagagagagagagagaga 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 207
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
