Query= MSMg01no527_m13.b1 MSMg01no527_m13.b1 CHROMAT_FILE:
MSMg01no527_m13.b1 PHD_FILE: MSMg01no527_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:10 2005
(699 letters)
>mm_chr13_30726678_30727776
Length = 1099
Score = 1313 bits (679), Expect = 0.0
Identities = 691/695 (99%)
Strand = Plus / Plus
Query: 5 gaattcctttgccggactgaataaaatccctctctatggctagatcgtgttttgtttatt 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttggaggactgaataaaatccctctctatggctagatcgtgttttgtttatt 264
Query: 65 tattggttgatggctataaggtttattaaatgatttttagtaaacattggcctctgagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattggttgatggctataaggtttattaaatgatttttagtaaacattggcctctgagta 324
Query: 125 tccagctcactattttcagttctttgtgatctatgtcaaggaactgagttgccagattgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagctcactattttcagttctttgtgatctatgtcaaggaactgagttgccagattgt 384
Query: 185 ggtataattgtccgtataactgtgtagaaacattacactgctttccacaacggttgtagc 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtataattgtacgtataactgtgtagaaacattacactgctttccacaacggttgtagc 444
Query: 245 atcttaaattctcattagcaatgtacaaggatcccggattatctctgtcctcaccaacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcttaaattctcattagcaatgtacaaggatcccggattatctctgtcctcaccaacac 504
Query: 305 tcgtttattatggctttaattagcattttcctagtgattagtagtgttaacgattcatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcgtttattatggctttaattagcattttcctagtgattagtagtgttaacgattcatga 564
Query: 365 ctttattcctcatttgtatatcttcctttattgggctttctgtctttgtctttttgacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttattcctcatttgtatatcttcctttattgggctttctgtctttgtctttttgacaa 624
Query: 425 aaacaaatagttgagttctggaagttttttaattgattctgaatattaatcttattagac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaacaaatagttgagttctggaagttttttaattgattctgaatattaatcttattagac 684
Query: 485 acagatataatttataaatattcatattttataggtgtctttcactttcttgataatatc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acagatataatttataaatattcatattttataggtgtctttcactttcttgataatatc 744
Query: 545 ttttaagtacaaaacttttgataaaatatataatataccttacttttttcttttgttgct 604
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 ttttaagtacaaaacttttgataaaatatataatataccatacttttttcttttgttgct 804
Query: 605 tggttctgtgagaaactattatcaaattccaagaaatatcaatttattcctatttgggtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggttctgtgagaaactattatcaaattccaagaaatatcaatttattcctatttgggtc 864
Query: 665 ctgaattttttttcaagacttatttttattttctt 699
|||||||||||||||||||||||||||||||||||
Sbjct: 865 ctgaattttttttcaagacttatttttattttctt 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_m13.g1 MSMg01no527_m13.g1 CHROMAT_FILE:
MSMg01no527_m13.g1 PHD_FILE: MSMg01no527_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:10 2005
(618 letters)
>mm_chr13_30916158_30917176
Length = 1019
Score = 1017 bits (526), Expect = 0.0
Identities = 587/616 (95%), Gaps = 18/616 (2%)
Strand = Plus / Minus
Query: 1 attggtgggtaggagcatcctgtctgcagagagcagaggaactgcagagatcaaggtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 attggtgggtaggagcatcctgtctgcagagagcagaggaactgcagagatcaaggtgta 797
Query: 61 agggtcaggctgggcgtgtccagaagatctgctgacagccattatcaacagctgtgatat 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 796 agggtcaggctgggcgtgtccagaagatcggctgacagccattatcaacagctgtgatat 737
Query: 121 cattgaagtagcagcctctcaggtccccttttattttagcccagtaacccaaagtagatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cattgaagtagcagcctctcaggtccccttttattttagcccagtaacccaaagtagatc 677
Query: 181 tcaccaggactaccgtttgtgataaaatcttaaattgccaaaatatttgttggatactca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 676 tcaccaggactaccgtttgtgataaaatcttaaattgccaaaatatttgttgaatactca 617
Query: 241 gattgtttggg-------ttgacacaaatgtttaattggcactagcacctcaaagtggga 293
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 616 gattgtttgggacaattgttgacgcaaatgtttaattgacactagcacctcaaagtggga 557
Query: 294 acaggcaaagctaaaaagaaaacattctttaatttgtgaatttgcaggataaaa-tactc 352
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 556 acaggcaaagctaaaaagaaaacattctttaatttgtgaattagcaggataaaaatactc 497
Query: 353 tactaaacctctagatacaactttgtcatatgttaaaatttgaaatgggtccaccatggt 412
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 496 tactaaacctctagatacaactttgtcatatgttaaaatttgaaatgggtctaccacggt 437
Query: 413 ggctcagcagatagagcacctgctgccaagcttgataagctgagtttgattctcaaagcc 472
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 436 ggctcagcagatagaggacctgctgccaagcttgataaactgagtttgattctcaaagcc 377
Query: 473 catgcagtgggagagagaaccaattcccaaaagatgtcccttgacctccacatacatgcc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 catgcagtgggagagagaaccaattcccaaaagatgtcccttgacctccacatacatgcc 317
Query: 533 caggtacacgcccaggtacatacacacacacacacacagaacgagagcaagagcgagaga 592
||||||||| | || |||||||||||||||||||||||||||||| |||||||
Sbjct: 316 caggtacac-------t-ca--cacacacacacacacagaacgagagcaagatcgagaga 267
Query: 593 gagcgagagagagaga 608
||| ||||||||||||
Sbjct: 266 gagagagagagagaga 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
