Query= MSMg01no528_h18.b1 MSMg01no528_h18.b1 CHROMAT_FILE:
MSMg01no528_h18.b1 PHD_FILE: MSMg01no528_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:05 2005
(635 letters)
>mm_chr13_107041182_107042213
Length = 1032
Score = 1183 bits (612), Expect = 0.0
Identities = 626/632 (99%), Gaps = 3/632 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcaatctcaggattcctcttctatagttcatctgtgttatgcacggaggcaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ggaattctcaatctcaggattcctcttctatagttcatctgtgttatgcacggaggcaag 773
Query: 64 gcagtcttcccaaaatcactcccaggacctttggatgcttggtgattagagccaaaatgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcagtcttcccaaaatcactcccaggacctttggatgcttggtgattagagccaaaatgc 713
Query: 124 tattaatgctcagagttttagctttctaactccgtttggatttaatgttttattctcaaa 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tattaatgctcagagtcttagctttctaactccgtttggatttaatgttttattctcaaa 653
Query: 184 caaatgtacaaaaggatggcaagatggctttggagctgctaggtgatgcagcttattact 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caaatgttcaaaaggatggcaagatggctttggagctgctaggtgatgcagcttattact 593
Query: 244 acttaacataaacatctcacaattttttaggtaaacaaagcaatataaatgtgaattaaa 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 592 acttaacataaacatctcacaattttttaggtaaacaaagcaatataattgtgaattaaa 533
Query: 304 agccctcgaaacaaaataaataaacaaatctatttataacatcaactataatattataaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agccctcgaaacaaaataaataaacaaatctatttataacatcaactataatattataaa 473
Query: 364 aactttaataacattgaatacataggagccacgagttctgaaacaactggaagcccagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aactttaataacattgaatacataggagccacgagttctgaaacaactggaagcccagaa 413
Query: 424 cttggaaagtggaggcaagaggactctttcaaagtagcagcagagagagtagtgaagaag 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cttggaaagtggaggcaagaggactctttcaaagtagcagcagagagagtagtgaag--- 356
Query: 484 gaggaagaggagaaagtatgccatgatagtcatgaattggtactaattttagctgccatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaggaagaggagaaagtatgccatgatagtcatgaattggtactaattttagctgccatt 296
Query: 544 ccttctgtgaaaggcattacaagttggcattcctctgtagaagggcgcttgtcatcatgc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccttctgtgaaaggcattacaagttggcattcctctgtagaagggcgcttgtcatcatgc 236
Query: 604 tcatcattgatttgggtttttgcattgtattg 635
||||||||||||||||||||||||||||||||
Sbjct: 235 tcatcattgatttgggtttttgcattgtattg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1032
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1022
Effective search space: 638750
Effective search space used: 638750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_h18.g1 MSMg01no528_h18.g1 CHROMAT_FILE:
MSMg01no528_h18.g1 PHD_FILE: MSMg01no528_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:05 2005
(635 letters)
>mm_chr13_106978090_106979124
Length = 1035
Score = 1116 bits (577), Expect = 0.0
Identities = 622/639 (97%), Gaps = 8/639 (1%)
Strand = Plus / Plus
Query: 1 caagtttgataccagcctgagtctacataggaaaaaaaaaa---cctgtctcagaaaaag 57
||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||
Sbjct: 201 caagtttgataccagccagggtctacata--aaaaaaaaaaaaacctgtctcagaaaaag 258
Query: 58 aaaggaaacctcaaacccatccagaaacctttggagaatattgaatattgaataaaaaga 117
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 259 aaaggaaacctcaaacccatccagaaacctttggagaatattgaatattaaataaaaaga 318
Query: 118 agtttcactacagattattacagcataatgtgctacacatccaagacatttcatgaagtg 177
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtttcactacagattattgcagcataatgtgctacacatccaagacatttcatgaagtg 378
Query: 178 ttaaaacaaagtaaaaattatctcaatcaccttcatcatccaaatagattcacgccattg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttaaaacaaagtaaaaattatctcaatcaccttcatcatccaaatagattcacgccattg 438
Query: 238 tgataggacctcaaggtcctatcacatagaaccaacaatactccagaataaggggagtta 297
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 tgataggaccttgaggtcctatcacacagaaccaacaatactccagaataaggggagtta 498
Query: 298 atagcatcatctattaaagagtttaacgtagattaacctggcagttggagccacctgtga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atagcatcatctattaaagagtttaacgtagattaacctggcagttggagccacctgtga 558
Query: 358 tagctttagccaaagcaaaaat-aacctcacatgtttatgtaaagatgtgtatttacaaa 416
|||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 559 tagctttagc-aaagcaaaa-tcaacctcacatgtttatgtaaagatgtatatttacaaa 616
Query: 417 tttggaacaatgggtcataaaactaagtaggtagctagatacggtgtagcagacctgtta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttggaacaatgggtcataaaactaagtaggtagctagatacggtgtagcagacctgtta 676
Query: 477 ctccagcattggagacaagagaataatgagctgacggctctactgatgttagacagtatc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctccagcattggagacaagagaataatgagctgacggctctactgatgttagacagtatc 736
Query: 537 tctagaagtttataaaagaagttatactcctgccttctcacaggactgactgttatgttt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctagaagtttataaaagaagttatactcctgccttctcacaggactgactgttatgttt 796
Query: 597 gctgatgattacacttcaaagagatagcccatgtgaatg 635
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 797 gctgatgattacacttcaaagagatagcccatgttaatg 835
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 236 tgtgataggacctcaaggtcctatcaca 263
||||||||||||||||||||||||||||
Sbjct: 464 tgtgataggacctcaaggtcctatcaca 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
