NNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTGTTTTTAATAGCTGAGTAGTATTCCATTGTGTAAATTA
CCACATTTTTTGTATCCACTCCTCTATTGATGGATATCTGGGTTCTTTAC
ATCTTCTGGCTATTATAAATAAGGCTGCTAAGAACATAGTGGAGCATGTG
TCCTTATTATATATTGGAGCATGTTCTGGGTATATGCTTAGGAGTGGTCT
AGCTATGTTCCAGTAGTACTATGTTCAGTTTTCTGAGGAACCATGAAACT
GATTTCCATAGTGGTTTTACCAGCTTGCAATCCCACCTGCAGTTAAGGAG
TGTTCCTCTTTCTGCACATCCTTCCCAGCATCTGCTGTCACCTGAGTTTT
TCACCTTAGCCATTCTGACTTGTCTGAGGTGGAATCTCAGTGTTGTTTTG
ATGTGAATTTCCCAGATGACTAAGGATATTGAACATTTCTTTAGGTGCTT
CTCAGCCATTCAGTATTCCTTGCTTGAGAATCCTTTGTTTATCTCTGTAC
CCCATTTTTAATAGGGTTATTTGGTTCTCTGGCGTATAACTTCTTGAGTT
CTTTGTATATATTGGATATTAGCCCTCTATCAGATATAGGATTGGTAAAG
ATCATTTCCTAATCTGTTGGATGCCTTTTTGTCCTACTGACATTGTCCTT
TGTCTTACAGAAGCTTTGTAATTTTATGAAGTGACATTTGCCAATTCTTG

NNNNCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAACTATATGGCATATC
AACCAATTATATTTTTACCTCTTGTTCCTTTTTCTGTTTGTTTGTTTTTG
TTTGTTTGTTTGTTTTTTGAGACAGGGTTTCTTTGTTTATCTCTGGCTGT
TCTGGAACTCACTCTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCACC
TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGACCG
GCCCTGTTGTTCTTGATACAGCTCTTACTATATAGCCCTGACTGGCCTAG
AACTAGATAGATCAGGCTGGTCTTCAGCTCACAGAAATCTGCCTGGTTAA
GCCTTGGAAGTGCTATGTTTAAGAACATATGTTCCAAATAAGTCCTGCTT
AAATAATTTGTCAATCTATGTATATGTTTGCATTTGATAATGTTTCGGGT
TTTAAAGAGTCCGACTTCAATGCCATGTAAAGCAGGATTATTTCTCATAG
TTCTTTCTCTAAGATATCAATTACTCTCATTCTAAGGGACTATGATAAGA
TTAAAATAACACTCTTTAGTGCCTAAACAAGGATAAAGGGCAATGAAACT
ATAAAAATGGACGTTTATTTACCTCAATAAAACACAAGAAAAAATGTGTA
CCAGTTCACAGGTAGCTGAATGCTTATGCATTTCAATATGATATGAGATG
GAGATCACCN

Query= MSMg01no528_k21.g1 MSMg01no528_k21.g1 CHROMAT_FILE:
MSMg01no528_k21.g1 PHD_FILE: MSMg01no528_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:21 2005
         (589 letters)



>mm_chr13_88842252_88843240
          Length = 989

 Score =  845 bits (437), Expect = 0.0
 Identities = 531/599 (88%), Gaps = 57/599 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaaactatatggcatatcaaccaattatatttttacctcttgttcctttttctgttt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 238 attcaaactatatggcatatcaacctattatatttttacctcttgttcctttttctgttt 297

                                                                       
Query: 61  gtttgtttttgtttgtttgtttgttt----------tttgagacagggtttctttgttta 110
           ||||||||||||||||||||||||||          ||||| ||||||||||| ||||||
Sbjct: 298 gtttgtttttgtttgtttgtttgtttatttgtttgttttgacacagggtttctctgttta 357

                                                                       
Query: 111 tctctggctgttctggaactcactctgtaaaccaggctggcctcgaactcagaaatccac 170
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 358 tctctggctgttctggaactcactctgtagaccaggctggcctcgaactcataaatccac 417

                                                                       
Query: 171 ctgcctctgcctcccaagtgctgggattaaaggcgtgcaccaccacgaccggccctgttg 230
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 418 ctgcctctgcctcccaagtgctgggattaaaggcgtgcaccaccacgaccagccctgttg 477

                                                                       
Query: 231 ttcttgatacagctcttactatatagccctgactggcctagaactagatagatcaggctg 290
                                                          |||||||||||||
Sbjct: 478 -----------------------------------------------atagatcaggctg 490

                                                                       
Query: 291 gtcttcagctcacagaaatctgcctggttaagccttggaagtgctatgtttaagaacata 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtcttcagctcacagaaatctgcctggttaagccttggaagtgctatgtttaagaacata 550

                                                                       
Query: 351 tgttccaaataagtcctgcttaaataatttgtcaatctatgtatatgtttgcatttgata 410
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 551 tgttccaaataagtcctgcttaaataatttgtcaatctatttatatgtttgcatttgata 610

                                                                       
Query: 411 atgtttcgggttttaaagagtccgacttcaatgccatgtaaagcaggattatttctcata 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atgtttcgggttttaaagagtccgacttcaatgccatgtaaagcaggattatttctcata 670

                                                                       
Query: 471 gttctttctctaagatatcaattactctcattctaagggactatgataagattaaaataa 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gttctttctctaagatatcaattactctcattctaagggactatgataagattaaaataa 730

                                                                      
Query: 531 cactctttagtgcctaaacaaggataaagggcaatgaaactataaaaatggacgtttat 589
           ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 731 cactctttaatgcctaaacaaggataaagggaaatgaaactataaaaattgacttttat 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)