Query= MSMg01no528_p16.b1 MSMg01no528_p16.b1 CHROMAT_FILE:
MSMg01no528_p16.b1 PHD_FILE: MSMg01no528_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:45 2005
(710 letters)
>mm_chr13_4730494_4731603
Length = 1110
Score = 1085 bits (561), Expect = 0.0
Identities = 579/585 (98%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 126 tggctaaggtcaaaacctcaggtgacaacacatattgatgaggatgtagagaaagaggaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 tggctaaggtcaaaacctcaggtgacaacacatattgatgaggatgtagagaaagaggaa 1051
Query: 186 cacttctccattactggtaggattgcaaactggtaaaaccactctaaattaacctagaga 245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1050 cacttctccattactggtaggattgcaaactggtaaaaccactttaaattaacctagaga 991
Query: 246 ttcctgagaaaattgaaaatggatttacctgaagactcagcaataccactcttgaaaata 305
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 990 ttcctgagaaaattgaaaatggatttacctgaagactcagcaataccactctt-aaaaaa 932
Query: 306 tacccaaagatgccctatcatattgtatatatgtattatctttatgatatacaaaaatta 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tacccaaagatgccctatcatattgtatatatgtattatctttatgatatacaaaaatta 872
Query: 366 tagaagctataatgtcatgaatttttttcaaatgacccaagtgatttccaagttaagtaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tagaagctataatgtcatgaatttttttcaaatgacccaagtgatttccaagttaagtaa 812
Query: 426 ggggattagacaaagtaagattgtactggaactgatattattgaaattgttttacagagt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggggattagacaaagtaagattgtactggaactgatattattgaaattgttttacagagt 752
Query: 486 actgattatcctagtctttcaaagactttcacaattcttttcagtaaatttccataatca 545
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 751 actgattatcctagtctttcaaagactttcagaattcttttcagtaaatttccataataa 692
Query: 546 attaaacaccacttggagaaaaatgtagtgcttgggtgatacgtcttgtatacttaaaac 605
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 691 attaaacaccacttggagaaaaatgtagtgcttgggggatacgtcttgtatacttaaaac 632
Query: 606 acatgaaaattgacaaaactgccccatgatatccagaaactccatcaaacattatgaggt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acatgaaaattgacaaaactgccccatgatatccagaaactccatcaaacattatgaggt 572
Query: 666 ttgttgtttgtttggcatgtctgagaacaatgagtatatttattt 710
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgttgtttgtttggcatgtctgagaacaatgagtatatttattt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no528_p16.g1 MSMg01no528_p16.g1 CHROMAT_FILE:
MSMg01no528_p16.g1 PHD_FILE: MSMg01no528_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:45 2005
(684 letters)
>mm_chr13_4575265_4576348
Length = 1084
Score = 1197 bits (619), Expect = 0.0
Identities = 669/689 (97%), Gaps = 7/689 (1%)
Strand = Plus / Plus
Query: 1 catcttcaattgcaggtttggtgtactagccttcgcccagaacttgtgagagcttccttg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 198 catcttcaattgcaggtttggtgtactagccttcacccagaacttgtgagagcttccttg 257
Query: 61 gaacggtcactgcaaaaacttcagttcgattatgtggacctgtatctcattcattaccca 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 258 gaacggtcactgcaaaaacttcagttcgactatgtggacctgtatctcattcattaccca 317
Query: 121 atggccctgaaagtatgttgcctgaaatttcagaaatatttcatatagagtatagtttgg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 318 atggccctgaaagtatgttgcctgaaattccagaaatatttcatatagagtatagtttgg 377
Query: 181 aattatggtgtctatgatatggcagctatagcttctatgaatctaaactgcacatcctgc 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aattatagtgtctatgatatggcagctatagcttctatgaatctaaactgcacatcctgc 437
Query: 241 tgaggctcagagatcttaacaaaggaggggaaagaatgattttatggtccaggagagtag 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaggctcaga--tcttaacaaaggaggggaaagaatgattttatggtccaggagagtag 495
Query: 301 aaagtttgttgtgagattacatcttctagagatatcagagaagctatactcacgaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 496 aaagtttgttgtgagattacatcttctagagatatcagagaagctatacccacaaaattt 555
Query: 361 caccaatgtgctgaccagagtcaagctgaacaagaaccagtagacatgttaatgtggaag 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 556 caccaatgtgctgaccagagtcaagctgaacaaggaccagtagacatgttaatgtggaag 615
Query: 421 gggaaggtctcatgaggccaaatattagacaaaaaataagcatacaaaaaaaa-----cc 475
||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 616 gggaaggtctcatgaggccaaatattagacaaataacaagcatacaaaaaaaaaaaaacc 675
Query: 476 tcaaaaaatatctatagacaactaaggaatgctgaaagcaagttagataatcttctcagg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcaaaaaatatctatagacaactaaggaatgctgaaagcaagttagataatcttctcagg 735
Query: 536 aaagagacctcagattttttatcaaccaagtggtcaactataaataatcgtaaaagccaa 595
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 736 aaagagacctcagactgtttatcaaccaagcggtcaactataaataatcgtaaaagccaa 795
Query: 596 caaacacatttcataatgacacagagatacaatatttatagaaacatgtaatatatataa 655
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 caaacacatttcatcatgacacagagatacaatatttatagaaacatgtaatatatataa 855
Query: 656 gaaaatagaatcctaccactgaagggtgt 684
|||||||||||||||||||||||||||||
Sbjct: 856 gaaaatagaatcctaccactgaagggtgt 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
