BAC Information

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BAC

Clone NameMSMg01-529B19
Chromosome13 (Build37)
Map Location 76,438,237 - 76,438,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529B19.T7 (MSMg01no529_b19.b1)MSMg01-529B19.TJ (MSMg01no529_b19.g1)
ACCAG598068AG598069
length787776
length of high quality
(start - end)
616 (45 - 660)669 (73 - 741)
definitionCHROMAT_FILE: MSMg01no529_b19.b1 PHD_FILE: MSMg01no529_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:56 2005CHROMAT_FILE: MSMg01no529_b19.g1 PHD_FILE: MSMg01no529_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACGGAATGGCAGAGAAGCACCTGAAAAAATGTT
GAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTC
CACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGTCTGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
GTACTACTCAGCTATTAAAAAGAACGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGATGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGG
AACTCTCACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACTTA
GTATACCCAAGATATAAGATATAATTTGCTAAACACATTAAACTCCAGAG
AACGAAGACCCAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAACAAA
ACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAA
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCATAAGAATTTCTCATTCTTACAAA
ATGAGAAAGGCTGGCCTATGAATTTCTCAGGCTTTCTGTTTCACAACATG
TTGACTTCTTTATGTTTCCATGTTGCAATGTCGTCTGTTATAAGGCCTTC
CCCAGAGCCAACTGGACGCTGGTGCCATGCTCCTGGAGCCTACAGGTATG
ATCCAAACAAACCTCCTTTCAAGTACTGGTGTTTTTATTCATAGCAACAG
ATCAAAACAGATGGCCACTAGCAGTTGCAGTAATCTGTAATTAAAAGCTT
TGTAATCTCAGTGACAAGAGAGTTCTTTTCCAATATTAGAGGGTCTAGCA
CTGACAACTGTTGGTGTGGCTCTGTTTGAGTCCATTCTAAACAATCATTG
TTTTGGAGATGCTCCATACTCCAGGTGACAAGACTGGGACCATGTCTTTC
TTTCCTTGTTAACAAGAAGAGAAACTGTGACCCAAGGGAGTGCATCATGT
GTCCATCACAGCTAATGAGCACTGTCATGTATGACCCTTCTTATTACCCT
TTCCTTGGTAGAGTTCATCAGTGTACACAACTGCATCTTCACATGATACG
ATAGTCCTTTCTCTTCACCATCTCACCCTCAAACTCAAGCCCTCTAGCTT
TGTAACCCATCCCAAGTTACATGGCACACTGTAAACTAATCNAAATAGTA
GCATGATGCCCCGATGAACATTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_b19.g1 MSMg01no529_b19.g1 CHROMAT_FILE:
MSMg01no529_b19.g1 PHD_FILE: MSMg01no529_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:56 2005
         (669 letters)



>mm_chr13_76438037_76439105
          Length = 1069

 Score = 1294 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcataagaatttctcattcttacaaaatgagaaaggctggcctatgaatttctcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcataagaatttctcattcttacaaaatgagaaaggctggcctatgaatttctcaggc 260

                                                                       
Query: 61  tttctgtttcacaacatgttgacttctttatgtttccatgttgcaatgtcgtctgttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctgtttcacaacatgttgacttctttatgtttccatgttgcaatgtcgtctgttata 320

                                                                       
Query: 121 aggccttccccagagccaactggacgctggtgccatgctcctggagcctacaggtatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggccttccccagagccaactggacgctggtgccatgctcctggagcctacaggtatgat 380

                                                                       
Query: 181 ccaaacaaacctcctttcaagtactggtgtttttattcatagcaacagatcaaaacagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaacaaacctcctttcaagtactggtgtttttattcatagcaacagatcaaaacagat 440

                                                                       
Query: 241 ggccactagcagttgcagtaatctgtaattaaaagctttgtaatctcagtgacaagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccactagcagttgcagtaatctgtaattaaaagctttgtaatctcagtgacaagagag 500

                                                                       
Query: 301 ttcttttccaatattagagggtctagcactgacaactgttggtgtggctctgtttgagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttttccaatattagagggtctagcactgacaactgttggtgtggctctgtttgagtc 560

                                                                       
Query: 361 cattctaaacaatcattgttttggagatgctccatactccaggtgacaagactgggacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattctaaacaatcattgttttggagatgctccatactccaggtgacaagactgggacca 620

                                                                       
Query: 421 tgtctttctttccttgttaacaagaagagaaactgtgacccaagggagtgcatcatgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctttctttccttgttaacaagaagagaaactgtgacccaagggagtgcatcatgtgt 680

                                                                       
Query: 481 ccatcacagctaatgagcactgtcatgtatgacccttcttattaccctttccttggtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatcacagctaatgagcactgtcatgtatgacccttcttattaccctttccttggtaga 740

                                                                       
Query: 541 gttcatcagtgtacacaactgcatcttcacatgatacgatagtcctttctcttcaccatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttcatcagtgtacacaactgcatcttcacatgatacgatagtcctttctcttcaccatc 800

                                                                       
Query: 601 tcaccctcaaactcaagccctctagctttgtaacccatcccaagttacatggcacactgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaccctcaaactcaagccctctagctttgtaacccatcccaagttacatggcacactgt 860

                    
Query: 661 aaactaatc 669
           |||||||||
Sbjct: 861 aaactaatc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)