Query= MSMg01no529_l05.b1 MSMg01no529_l05.b1 CHROMAT_FILE:
MSMg01no529_l05.b1 PHD_FILE: MSMg01no529_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
(512 letters)
>mm_chr13_10258486_10259392
Length = 907
Score = 959 bits (496), Expect = 0.0
Identities = 503/508 (99%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 5 gaattcctaatgcttccaatgttccccttggtttacaaacatacaaagttgacttgtctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaatgcttccaatgttccccttggtttacaaacatacaaagttgacttgtctc 264
Query: 65 atgttttccagcccattatccatttcacaatacactggtgaactatcttctaaaatgcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttttccagcccattatccatttcacaatacactggtgaactatcttctaaaatgcag 324
Query: 125 atctttcaatagattaaaaacactcagattgtgagtcaatgatccaatgttgcaagacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctttcaatagattaaaaacactcagattgtgagtcaatgatccaatgttgcaagacaa 384
Query: 185 ccaggaagagagaaaatgaggtgggattagagcagacctcacttaatctctgattctgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaggaagagagaaaatgaggtgggattagagcagacctcacttaatctctgattctgaa 444
Query: 245 tcaattaatcaataaaatatatgttaaattcccaccaagtcagaagaattttagtaagct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaattaatcaataaaatatatgttaaattcccaccaagtcagaagaattttagtaagct 504
Query: 305 ccatggtcaattttccaagaatgtgaacactgaattataactaagggctttggggtaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccatggtcaattttccaagaatgtgaacactgaattataactaagggctttggggtaaaa 564
Query: 365 tagtaagagaaaagaccagacttctctgagttaagggaaggaacagggactacagggcag 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagtaagagaaaagac-----ttctctgagttaagggaaggaacagggactacagggcag 619
Query: 425 agccattacaaccctaagccttaggcaaagtaagagtattacaagcaatcagctacttgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccattacaaccctaagccttaggcaaagtaagagtattacaagcaatcagctacttgc 679
Query: 485 agcacacacaaaccccactaaactagga 512
||||||||||||||||||||||||||||
Sbjct: 680 agcacacacaaaccccactaaactagga 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 907
Length adjustment: 10
Effective length of query: 502
Effective length of database: 897
Effective search space: 450294
Effective search space used: 450294
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_l05.g1 MSMg01no529_l05.g1 CHROMAT_FILE:
MSMg01no529_l05.g1 PHD_FILE: MSMg01no529_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
(397 letters)
>mm_chr13_10358180_10358972
Length = 793
Score = 694 bits (359), Expect = 0.0
Identities = 386/397 (97%), Gaps = 4/397 (1%)
Strand = Plus / Minus
Query: 1 acttgtccactccacgctttgagtattggaattgtgacgctgccttgtctgctggtgagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 572 acttgtccactccacgctttgagtattggaattgtgacgctgccttgtctgccg----gt 517
Query: 61 gtgtgagactctccttgcacgcaagggttggaagtaagagaggaaaggagcattggggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgtgagactctccttgcacgcaagggttggaagtaagagaggaaaggagcattggggac 457
Query: 121 tcgcatccatatggatgcatttttcaaaaccgcagaccttgttttgtggataagtgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcgcatccatatggatgcatttttcaaaaccgcagaccttgttttgtggataagtgtttt 397
Query: 181 gaacctgtctgaagtctgtaagcatatatgccaccatccacccacccgactccactgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaacctgtctgaagtctgtaagcatatatgccaccatccacccacccgactccactgata 337
Query: 241 ttcttggcagggttttgaaagggtggcagactctgctgttagggaaactgaccacttcat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttcttgacagggttttgaaagggtggcagactctgctgttagggaaactgaccacttcat 277
Query: 301 tgtaagctttcaacagatctttcctttccctctttgcctctgagacccaacaagatagaa 360
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 276 tgtgagctttcaacagatctttcctttccctctttgcctctgaggttcaacaagatagga 217
Query: 361 aatgtaccattcctggacacacacacacacacacaca 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 216 aatgtaccattcctggacacacacacacacacacaca 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 793
Length adjustment: 9
Effective length of query: 388
Effective length of database: 784
Effective search space: 304192
Effective search space used: 304192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
