Query= MSMg01no530_e04.b1 MSMg01no530_e04.b1 CHROMAT_FILE:
MSMg01no530_e04.b1 PHD_FILE: MSMg01no530_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:31 2005
(627 letters)
>mm_chr13_98991475_98992501
Length = 1027
Score = 1151 bits (595), Expect = 0.0
Identities = 619/627 (98%)
Strand = Plus / Plus
Query: 1 atgaaaaccagtaaatgtccccccacccccaccccatcactgtgtctatgagtcaggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atgaaaaccagtaaatgtccccccacccccaccccatcactgtgtctatgagtcaagtgg 260
Query: 61 gaaggtgtagaaatcatgccattcccagggacaggtgacattgcaggattctccctatgg 120
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 261 gaagctgtagaaatcatgccattcccagggacaggtgacattgcaggactctccctgtgg 320
Query: 121 gcactctagggccagagacaccattgctgttcttttctgtgttcatatgttagagcttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactctagggccagagacaccattgctgttcttttctgtgttcatatgttagagcttaa 380
Query: 181 tattcacactagcaaagataccttaaggtgcgctctgtccagaggacttgtgggaagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcacactagcaaagataccttaaggtgcgctctgtccagaggacttgtgggaagggt 440
Query: 241 ttcctgacaaattcctgtgagatggtttcttttagtaacagaagcagagctgcatttggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgacaaattcctgtgagatggtttcttttagtaacagaagcagagctgcatttggc 500
Query: 301 ctagccagtgctattatgagtcccgtccttatagaagttcacctgtgcacagtaatgagg 360
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagccagtactattatgagtcctgcccttatagaagttcacctgtgcacagtaatgagg 560
Query: 361 ctctgtgtcttgcacggctgctgcaaaaactcttcagaccattgcttgcctagcttaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgtgtcttgcacggctgctgcaaaaactcttcagaccattgcttgcctagcttaagc 620
Query: 421 cacatctctaaacatcaggcatagccctaagcatttgatggcttcctccaggctgtcatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacatctctaaacatcaggcatagccctaagcatttgatggcttcctccaggctgtcatc 680
Query: 481 atttgcctctctctacctcctgacacgtacctactgcagcactgaactgcaaagtgcaaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 atttgcctctctctacctcctgacacgtacctactgcagcactgaactgcaacgtgcaaa 740
Query: 541 gggactcatttcttctctgatcctctgcccctgtccacaagcccctgcccagctgttacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggactcatttcttctctgatcctctgcccctgtccacaagcccctgcccagctgttacc 800
Query: 601 tgttgttaagcaaagccaatgctgttt 627
|||||||||||||||||||||||||||
Sbjct: 801 tgttgttaagcaaagccaatgctgttt 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_e04.g1 MSMg01no530_e04.g1 CHROMAT_FILE:
MSMg01no530_e04.g1 PHD_FILE: MSMg01no530_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:31 2005
(673 letters)
>mm_chr13_99162478_99163552
Length = 1075
Score = 1270 bits (657), Expect = 0.0
Identities = 670/675 (99%), Gaps = 2/675 (0%)
Strand = Plus / Minus
Query: 1 ctggaggagggagcccgtgagtgtttattgccctgtcagcctttcacgacaaaagacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ctggaggagggagcccgtgagtgtttattgccctgtcagcctttcacgacaaaagacaaa 816
Query: 61 agttgctgtaatacgtgtgttcccacacacgcatccatatggacaatatcgagtgtaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agttgctgtaatacgtgtgttcccacacacgcatccatatggacaatatcgagtgtaggt 756
Query: 121 gctgatgaagtaaacggctccccagaattcagggtggcagctgcctggctgaaatatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gctgatgaagtaaacggctccccagaattcagggtggcagctgcctggctgaaatatgga 696
Query: 181 gactcactctcccagggaacctctgattaagtccaccatgcagagctgaaaggaattctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gactcactctcccagggaacctctgattaagtccaccatgcagagctgaaaggaattctg 636
Query: 241 agatgttatccatacccaaggtaacaaaaaagtccagctctgactggctcaggtcttgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agatgttatccatacccaaggtaacaaaaaagtccagctctgactggctcaggtcttgtg 576
Query: 301 cttctttgggccttgggcctctttctttttcttttttttt--ccccccaggcccagtggt 358
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 575 cttctttgggccttgggcctctttctttttctttttttttttccccccaggcccagtggt 516
Query: 359 ttctgttgtttagccgaagaatctagctttctcgtggccatgcatatttggggggagcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctgttgtttagccgaagaatctagctttctcgtggccatgcatatttggggggagcca 456
Query: 419 tgatttcctttctcctcggcacatctatttataacttcgttttgaggccgttcttaaccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgatttcctttctcctcggcacatctatttataacttcgttttgaggccgttcttaaccg 396
Query: 479 tgcatgttttaccaacgccagttctagctcatctcctctgaatcacgctgacaccagctc 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 395 tgcatgttttaccaacgccagttctagctcatctcctcggaatcacgctgacaccagctc 336
Query: 539 aaatgtgttgccagttgctttctgattatttttctggaagcttgcactctgaaaagcgtt 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 aaatgtgttgccagttgctttctgattatttttctggaagcgtgcactctgaaaagcgtt 276
Query: 599 ttctaactcaggaccatgccccacatccaagaaacacacaactggaaaataaaaacgggc 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 275 ttctaactcaggaccatgccccacatccaagaaacacacaactggaaaataaaagcgggc 216
Query: 659 taaaggaaccaacag 673
|||||||||||||||
Sbjct: 215 taaaggaaccaacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space: 706095
Effective search space used: 706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
