Query= MSMg01no530_e16.b1 MSMg01no530_e16.b1 CHROMAT_FILE:
MSMg01no530_e16.b1 PHD_FILE: MSMg01no530_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:33 2005
(696 letters)
>mm_chr13_85329425_85330522
Length = 1098
Score = 1178 bits (609), Expect = 0.0
Identities = 673/699 (96%), Gaps = 12/699 (1%)
Strand = Plus / Minus
Query: 5 gaattcattgtaagactgtcttatctgtcctgcttaaattggacttataccaccaacaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcattgtaagaccgtcttatctgtcctgcttaaattggacttataccaccaacaaa 839
Query: 65 aaatagacctgaaactttctctctttgttaagtttactaagcatcaagcaaaatatctag 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaatagacctgaagctttctctctttgttaagtttactaagcatcaagcaaaatatctag 779
Query: 125 gagaagaataagcaaaaatcaataaactgaatctaggctttcattttacaagttctcaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gagaagaataagcaaaaatcaataaactgaatctaggctttcattttacaagttctcaaa 719
Query: 185 ctgtcagctggacatttttaaacagtcataacagagtatgtgtcaattcactcccaggtt 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 718 ctgtcagctggacatttttaaacagtcatgacagagtatgtgtcaattcactcccaggtt 659
Query: 245 tgataccattatttgtaaaattttt---aaaaagatacatattttcatgggttggaactc 301
||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 658 tgataccattatttgtaaa----ttaaaaaaaaaatacatattttcatgggttggaactc 603
Query: 302 tcccaaagtagcttttgcaataaatccatatgtcaccaaaattaaaataactcagttcat 361
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcccaaagtagcttttgcagtaaatccatatgtcaccaaaattaaaataactcagttcat 543
Query: 362 tgcctacctgttttgttagtacaaattttatttgcctgaaatttgtagaagctactataa 421
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgtctacctgttttgttggtacaaattttatttgcctgaaatttgtagaagctactataa 483
Query: 422 agttatccagggccgtacacagaaatgaatgggagagttgtaggaagacctggatagagg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agttatccagggccgtacacagaaatgaatgggagagttgtaggaagacctggatagagg 423
Query: 482 gccaaagaacacgcca-tacttgtgtcaacgattttctttccttgtacaaccttctgtgt 540
||| |||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 422 cccatagaacacg-cattacttgtgtcaactattttctttccttgtacaaccttctgtgt 364
Query: 541 gaaggttgtttctggaaagcagatccaacaagccatcattcccacatctcaagtctttga 600
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 363 gaaggttgtttctggaaagcagatccaacaagccatcatccccccatttcaagtctttga 304
Query: 601 aaagttcccttcagttttggcaagaatttcaaccgccttacacttccgcttacaaagttg 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaagttcctttcagttttggcaagaatttcaaccgccttacacttccgcttacaaagttg 244
Query: 661 cttgtgcacg---ttcaaccactgctgcagaggtacagc 696
|||||||||| ||||||||||||||||||||||||||
Sbjct: 243 cttgtgcacgttcttcaaccactgctgcagaggtacagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1098
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1088
Effective search space: 746368
Effective search space used: 746368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_e16.g1 MSMg01no530_e16.g1 CHROMAT_FILE:
MSMg01no530_e16.g1 PHD_FILE: MSMg01no530_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:33 2005
(655 letters)
>mm_chr13_85161044_85162098
Length = 1055
Score = 1243 bits (643), Expect = 0.0
Identities = 653/657 (99%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 1 cttacctttccatgaagggatgttggattttgtcaaatcttttgtcagtatcaaatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cttacctttccatgaagggatgttggattttgtcaaatcttttgtcagtatcaaatgaag 258
Query: 61 taatcgtgttttttttt--ctttgagtttgtttatgcagtggattgttttgatggatttc 118
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 259 taatcgtgtttttttttttctttgagtttgtttatgcagtggattgttttggtggatttc 318
Query: 119 cgtatattgcacaatccctgcatccctggtatgaagcctacttaattgcggtgaatgatc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cgtatattgcacaatccctgcatccctggtatgaagcctacttaattgcggtgaatgatc 378
Query: 179 aatgtgatgttttcttggatttggtttgtaagaattttattgagtatttttacatcaata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgtgatgttttcttggatttggtttgtaagaattttattgagtatttttacatcaata 438
Query: 239 ttcataggggaaattggtctgaagttctctctctctctctctttgagcgagaggaacagc 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 439 ttcataggggaaattggtctgaagttctctctctctctctctttgagggagaggaacagc 498
Query: 299 attttatgtgtggatatgcatgtacttacatatgttttaaaaaagcttgaaatagcacag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attttatgtgtggatatgcatgtacttacatatgttttaaaaaagcttgaaatagcacag 558
Query: 359 aataataatatcatagtggctgtcttggtgggaatgaaatcaaagtctacaaagtatttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aataataatatcatagtggctgtcttggtgggaatgaaatcaaagtctacaaagtatttt 618
Query: 419 ccttgagatttctgtatttctaccagtttttaaaaccactacatttttattttatgtact 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccttgagatttctgtatttctaccagtttttaaaaccactacatttttattttatgtact 678
Query: 479 tacttattttatgtatgtgcatcttcttggaaacctttaaacactgaattactatcatca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tacttattttatgtatgtgcatcttcttggaaacctttaaacactgaattactatcatca 738
Query: 539 ttttttcaaggcacttactctgtggcctgagttggccctgagctcctagttctcccacct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttttcaaggcacttactctgtggcctgagttggccctgagctcctagttctcccacct 798
Query: 599 caacctcctaagttggggttagtaggtttgtaacaccacacctggtttctactatat 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caacctcctaagttggggttagtaggtttgtaacaccacacctggtttctactatat 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
