BAC Information

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BAC

Clone NameMSMg01-530F21
Chromosome13 (Build37)13 (Build37)
Map Location 50,861,034 - 50,861,73749,963,410 - 49,964,031
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161
Downstream geneLOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530F21.T7 (MSMg01no530_f21.b1)MSMg01-530F21.TJ (MSMg01no530_f21.g1)
ACCAG599022AG599023
length757770
length of high quality
(start - end)		707 (51 - 757)622 (82 - 703)
definitionCHROMAT_FILE: MSMg01no530_f21.b1 PHD_FILE: MSMg01no530_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:39 2005CHROMAT_FILE: MSMg01no530_f21.g1 PHD_FILE: MSMg01no530_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:39 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(50,861,034 - 50,861,737)(49,963,410 - 49,964,031)
sequence
NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCCTTCTTCGTTACTCTGACTATAAAGGCACGATTTGGTGGGA
AAGAAGAGCAACTCTTTGTTCAATAATTAAGGAGAGTCCTAAGAGATACA
GGCAGACAATATTGCTGACATCCATTCTTCCTCAGAACCCTCTCTGAGGC
ACAGGGAGCAAAGCTGCACAGCTTGACAGTCAGGCCTCAGAGGCAGCTCA
GCAGCTTGTGAGCCCCACTGCTCACAGGCTGCAGATGGACTCAGGAGTGC
AGGGTGACTGACTGAGAGGTGCCCATTCCTGCAGGCCACCTGGCAACAGG
CATCTTAGTGATCCGCAGGCCAATCCATTGCCTGCTTTGATTAATTTAAC
CATGATGATTTGGGTCAATGGTCTTTCTCCTCCCATCTGTGGGATTAACA
CTACCCTGACACTCTCTAAATTCAAACTCTGAAAGAGGAGAATCAAAAAG
AATTGTTTGATGTTGTTTTGAGACAAGGACTTGCTATTAGCACAGGCTAG
ACTAAAACTTTCTGCAATCCTGACTTAGTCTCCCTAAAGCTTGGAAACAC
AGGCATGAACCTCTACACCCAAGAGAACATCAAGAGAAGACAAATCTCAA
CTCAGAATGATCAGCATATCCTCCTGCCATCAGGAATTTGGGAGGCCAGA
AGGCAGCGGGCTGATATAGTCAAAGTGGTAAAATCTGAGAACATTCCTGT
CGGTTGG

NAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGTGCTCTGTACCT
TATTATTTGTCAGGTTATTTTGTTTGTTGGTGTCTATTTTCCTGAATTCT
ATACATATTCCTAACATGAATTTATCTGAAGGCAACAAATGTTGAACAAT
TGGTAAATTTGTTACTCTATTCTTGTGTTTCATTTTAAAAACTGTTCATT
AGTTGATTGTTTTTATTTTTGGTATTTAACTAATTTTAAATTTAAGTAAT
TCTTGTTTAAGTAATTCTTTGAATATTCTAAATGTTAAGGCTCCACACTG
GGATTTCACTGTTAGCATGACCTCTCATCCTTTGAGCCTGTAATGCAAAC
ATCTTTTATCTGCTTAATATAACCATTTAATTTAATGTAATTTCATTTTC
AACTTATTGGGCTCTTGTCTGTGCTATTGTTGTTCTTTTGTCCATTAATT
TTTTTATTCACTTTACATCCTGACTATAATCCCTCCTTCCAGTCCCACCT
TCACAAATCTCTCTCCCATTACTCCCTTTCAGACACCCCACCTTTGGTAC
CAACCAACCCCAACAATCAACTGGAAGCAGGACTAAGTGCATCCTGTCCT
ACTGAGGTCTACCCATGCATTCCAGCTGGGGGAAGGGAACCCAAAGGCTG
GCAATAGAGTCAAAGACAGCTCCCATTCCAATTTTACAGGACTCACATGA
AGCCAGAGCTGCCCAACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_f21.b1 MSMg01no530_f21.b1 CHROMAT_FILE:
MSMg01no530_f21.b1 PHD_FILE: MSMg01no530_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:39 2005
         (707 letters)



>mm_chr13_50860832_50861938
          Length = 1107

 Score = 1261 bits (652), Expect = 0.0
 Identities = 691/704 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattccttcttcgttactctgactataaaggcacgatttggtgggaaagaagagcaac 62
           |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 203 ggaattccttcttcggcattctgactataaaggcacgatttggtgggaaagaagagcagc 262

                                                                       
Query: 63  tctttgttcaataattaaggagagtcctaagagatacaggcagacaatattgctgacatc 122
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctttgttcaataattaaggcgagtcctaagagatacaggcagacaatattgctgacatc 322

                                                                       
Query: 123 cattcttcctcagaaccctctctgaggcacagggagcaaagctgcacagcttgacagtca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cattcttcctcagaaccctctctgaggcacagggagcaaagctgcacagcttgacagtca 382

                                                                       
Query: 183 ggcctcagaggcagctcagcagcttgtgagccccactgctcacaggctgcagatggactc 242
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcctcagaggcggctcagcagcttgtgagccccactgctcacaggctgcagatggactc 442

                                                                       
Query: 243 aggagtgcagggtgactgactgagaggtgcccattcctgcaggccacctggcaacaggca 302
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cggagtgcagggtgactgactgagaggtgcccattcctgcaggccacctggcaacaggca 502

                                                                       
Query: 303 tcttagtgatccgcaggccaatccattgcctgctttgattaatttaaccatgatgatttg 362
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttagtgatccacaggccaatccattgcctgctttgattaatttaaccatgatgatttg 562

                                                                       
Query: 363 ggtcaatggtctttctcctcccatctgtgggattaacactaccctgacactctctaaatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtcaatggtctttctcctcccatctgtgggattaacactaccctgacactctctaaatt 622

                                                                       
Query: 423 caaactctgaaagaggagaatcaaaaagaattgtttgatgttgttttgagacaaggactt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caaactctgaaagaggagaatcaaaaagaattgtttgatgttgttttgagacaaggactt 682

                                                                       
Query: 483 gctattagcacaggctagactaaaactttctgcaatcctgacttagtctccctaaagctt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gctattagcacaggctagactaaaactttctgcaatcctgacttagtctccctaaagctt 742

                                                                       
Query: 543 ggaaacacaggcatgaacctctacacccaagagaacatcaagagaagacaaatctcaact 602
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 743 ggaaacacaggcatgaacctctacacccaagagaacatcaagagaaggcaaatctcaact 802

                                                                       
Query: 603 cagaatgatcagcatatcctcctgccatcaggaatttgggaggccagaaggcagcgggct 662
           || |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 803 caaaatgatgagcgtatcctcctgccatcaggaatttgagaggccagaaggcagcgggct 862

                                                       
Query: 663 gatatagtcaaagtggtaaaatctgagaacattcctgtcggttg 706
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gatatagtcaaagtggtaaaatctgagaacattcctgtcggttg 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no530_f21.g1 MSMg01no530_f21.g1 CHROMAT_FILE:
MSMg01no530_f21.g1 PHD_FILE: MSMg01no530_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:39 2005
         (622 letters)



>mm_chr13_49963210_49964231
          Length = 1022

 Score = 1149 bits (594), Expect = 0.0
 Identities = 615/622 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgttgtgctctgtaccttattatttgtcaggttattttgtttgttggtgtctattttc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttgtgctctgtaccttattatttctcaggttattttgtttgttggtgtctattttc 260

                                                                       
Query: 61  ctgaattctatacatattcctaacatgaatttatctgaaggcaacaaatgttgaacaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaattctatacatattcctaacatgaatttatctgaaggcaacaaatgttgaacaatt 320

                                                                       
Query: 121 ggtaaatttgttactctattcttgtgtttcattttaaaaactgttcattagttgattgtt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaatttgttactctattcttgtgtttcattttaaaaactgttcattagttgattgtt 380

                                                                       
Query: 181 tttatttttggtatttaactaattttaaatttaagtaattcttgtttaagtaattctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttttggtatttaactaattttaaatttaagtaattcttgtttaagtaattctttg 440

                                                                       
Query: 241 aatattctaaatgttaaggctccacactgggatttcactgttagcatgacctctcatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatattctaaatgttaaggctccacactgggatttcactgttagcatgacctctcatcct 500

                                                                       
Query: 301 ttgagcctgtaatgcaaacatcttttatctgcttaatataaccatttaatttaatgtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagcctgtaatgcaaacatcttttatctgcttaatataaccatttaatttaatgtaat 560

                                                                       
Query: 361 ttcattttcaacttattgggctcttgtctgtgctattgttgttcttttgtccattaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcattttcaacttattgggctcttgtctgtgctattgttgttcttttgtccattaattt 620

                                                                       
Query: 421 ttttattcactttacatcctgactataatccctccttccagtcccaccttcacaaatctc 480
           |||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 621 ttttattcaccttacatcttgactatagtccctccttccagtctcaccttcacaaatctc 680

                                                                       
Query: 481 tctcccattactccctttcagacaccccacctttggtaccaaccaaccccaacaatcaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcccattactccctttcagacaccccacctttggtaccaaccaaccccaacaatcaac 740

                                                                       
Query: 541 tggaagcaggactaagtgcatcctgtcctactgaggtctacccatgcattccagctgggg 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 tggaagcaggactaagtgcatcctgtcctactgaggtctacccatgcattccagcttggg 800

                                 
Query: 601 gaagggaacccaaaggctggca 622
           ||||||||||||||||||||||
Sbjct: 801 gaagggaacccaaaggctggca 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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