NNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTCAGCTGTCCGTAATTCATTCTTCAAAAGTAAGGGCT
AAAGAAAGCAACTCCTTTAAGTCGATGTGTGTGTGATAAAAGTATAACCT
AATTATACATTCTAAGATTACATAATATTTATATCCGAATACCTATTCAG
GTTTTCACCAGGGAAAATGTGATCAATAGGAAAGTAGAGCAATATCCCAT
CCTAATTGGACATTTGAATAAAGAAGCACATCACAGATACTGAAACACCT
CCCATGGAGATAACTTGTCCAATGGATCATTCTTAATGATCTCTAGAGTC
AACTATATCATGTGTTAATGGGTTTTATATGAATATTTTATGTCTATGTG
CAGCTTAAAATGATTGTCCTTGTTGGCCAAATGCCAGTTGAGCACTCCAC
TATCTACAAAACAGCTGACACATGAGAACTAAGGGATTGGTGAGTGACAA
GAAAGGAAAGTTTACTCATCATATGGTGAATCCAGGCCACTAGTCAAACA
TGCCGACCACCTGCTCTTCTGGCTTATGTAATGACCAAAGTATTAGAAGC
AACAAAAGGACATTTTGTGACCATATCTTATCTAAGTTTAAGGCTAAGTT
TTTCAGCTTCCTTAAATGTTTCTCCTATTGCTTCTTATCATTACTTCATA
TTTAAAATTCCTAAATTTAAACTTACTAATCATTTTCTCTGCCTGAATTC
CGGGGGAGTT

NNNTTTTTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGTGTTCCAGTGG
TTCCTAGAAAGTCCTTGAAGCCGACCCTGAGTTTGGAATTCAGTAAGAAT
GTTACATATTCAGAAACACTCAAATTTACTTCTAGTAGAGATAGTGAAAA
TAATCAGGCATTACAATTTACTTGAATAGAGATAGAAATGCTCAGGGCTG
GTCTGCATAGTAATTACTTAGGACAATAGCTGAGTCACACCCAAACACAG
GAATACACAATGGCCTAGGAAATAGGTGGGTTGTAGCATGAAAGGGTTAC
TAGAATGGAATTCCCCTGGTGCAGATTTTTTTCCACTAGGCTCAGAGGAA
TAGCATAATCAGGTTATTTACTAAAAGACCCCTGGTGGTGGATTTAACAA
TAAACTAGCAGTGTATCAGAGCATTCACCTGGCTCCTGTGTTTAGTTGAT
CTTAATTAGGGTTGTTCCTATTCTCAATTGTAAACAAGGCCTGGCTCCTG
CCATCTTTTTATGTATTTGTGTTAAGAACCAGTGTACCTTGGGGACATAC
TTGCCTAGCTTTCTTGTTTTTCTTCTGTATTAAAAGCCTGGTGTTTGCTT
GGAAAAATTACATCCAGATACAGCACTCCTTTGTGTCTATGTCCGTTTGT
CACCTTTTTCTTTTCTTGCAACACAGGAACCCTGAAATTTTTTCTGCAGA
TTGAGGGAGGCCGATN

Query= MSMg01no530_h22.b1 MSMg01no530_h22.b1 CHROMAT_FILE:
MSMg01no530_h22.b1 PHD_FILE: MSMg01no530_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:50 2005
         (709 letters)



>mm_chr13_4733595_4734703
          Length = 1109

 Score = 1286 bits (665), Expect = 0.0
 Identities = 695/705 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcagctgtccgtaattcattcttcaaaagtaagggctaaagaaagcaactcc 64
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 gaattcattcagctggaagtaattcattcttcaaaagtaagggctaaagaaagcaactcc 850

                                                                       
Query: 65  tttaagtcgatgtgtgtgtgataaaagtataacctaattatacattctaagattacataa 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tttaaatcgatgtgtgtgtgataaaagtataacctaattatacattctaagattacataa 790

                                                                       
Query: 125 tatttatatccgaatacctattcaggttttcaccagggaaaatgtgatcaataggaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 789 tatttatatccgaatacctattcaggttttcaccagggaaaatgcaatcaataggaaagt 730

                                                                       
Query: 185 agagcaatatcccatcctaattggacatttgaataaagaagcacatcacagatactgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agagcaatatcccatcctaattggacatttgaataaagaagcacatcacagatactgaaa 670

                                                                       
Query: 245 cacctcccatggagataacttgtccaatggatcattcttaatgatctctagagtcaacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cacctcccatggagataacttgtccaatggatcattcttaatgatctctagagtcaacta 610

                                                                       
Query: 305 tatcatgtgttaatgggttttatatgaatattttatgtctatgtgcagcttaaaatgatt 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 609 tatcatgtgttaatgggttttatatgaatattttatttctatgtgcagcttaaaatgatt 550

                                                                       
Query: 365 gtccttgttggccaaatgccagttgagcactccactatctacaaaacagctgacacatga 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtccttgttggccaaatgccaattgagcactccactatctacaaaacagctgacacatga 490

                                                                       
Query: 425 gaactaagggattggtgagtgacaagaaaggaaagtttactcatcatatggtgaatccag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaactaagggattggtgagtgacaagaaaggaaagtttactcatcatatggtgaatccag 430

                                                                       
Query: 485 gccactagtcaaacatgccgaccacctgctcttctggcttatgtaatgaccaaagtatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gccactagtcaaacatgccgaccacctgctcttctggcttatgtaatgaccaaagtatta 370

                                                                       
Query: 545 gaagcaacaaaaggacattttgtgaccatatcttatctaagtttaaggctaagtttttca 604
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 369 gaagcaacaaaaggacattttgtgaccatatcttatccaagtttaaggctaagtttttca 310

                                                                       
Query: 605 gcttccttaaatgtttctcctattgcttcttatcattacttcatatttaaaattcctaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcttccttaaatgtttctcctattgcttcttatcattacttcatatttaaaattcctaaa 250

                                                        
Query: 665 tttaaacttactaatcattttctctgcctgaattccgggggagtt 709
           |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 249 tttaaacttactaatcattttctctgcctgaattccaggggagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)