BAC Information

Click to search

BAC

Clone NameMSMg01-530J14
Chromosome13 (Build37)
Map Location 64,194,958 - 64,371,711
singlet/doubletdoublet
Overlap geneSlc35d2, Zfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530J14.T7 (MSMg01no530_j14.b1)MSMg01-530J14.TJ (MSMg01no530_j14.g1)
ACCAG599198AG599199
length760784
length of high quality
(start - end)		508 (48 - 555)659 (78 - 736)
definitionCHROMAT_FILE: MSMg01no530_j14.b1 PHD_FILE: MSMg01no530_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:58 2005CHROMAT_FILE: MSMg01no530_j14.g1 PHD_FILE: MSMg01no530_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,371,212 - 64,371,711)(64,194,958 - 64,195,613)
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCACCCCATTCCACTCAGCGTGCTTTGTTGTTACTGTTTTTGT
TTTGTTTTAAAATTGAACTGTATTTCTGATGTACCATGAAAACCAAATCT
AAAGACGGTGAACTGTGCACCAAATGCCCTGAGATACTAAAAATGCCAGA
GGAAGCTTCAATTAGTTAAGGAACCAGGGAGAAAAGAGGTCTTGAGTTTT
TAGTGTGTTGAAAACTGTAAGACTCGGAATTGGGGGAAATCAGTGAGAAA
AATCAAAGGACAAAGGAATTTTATCTTTCTATGAACCTCTTTGGTGCCAG
AGTTCCAAAGCTTTTTTCAATTATCAAATAATTAAAATAGAGCCTTCCTT
AAATGAGCATGCAAAGGTTCCTTATTTTGTTTTCTTGGGNTTTTTTTTTT
TTTTTTTTTTTTGGGCCTTTCTTTTCTCTGCTTCGATTCTCTTCTCTTCT
TGGCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TNTNTNNNTNNNTCTNTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCCCAAACATGGTTTCTCTGTGTTACCCTGGGTGTCCTGGAATTCACTCT
GTAAAAAAAGCTGGTCTCCAAGAAATAAATTCTCCTGTCTCTGCCCCCAT
AGGGCGAAATTTAGGGTTTTGCTCCACCCGCCTGCTGGTCAATGATTTAA
TTTTAAGTAA

NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAATCAAACTTAGAGATAAG
GAAAACAACTTTGAAAGACAGCAAAAACTGTTTTTCACTTCTCTAAGTGA
GTGGTTTCTGGTCTCAGGGTTTCAGAAGAGACACTAAAGGATGTTCTAAC
AATAGTCTGGGAGCCCCCGATGTCATGTTCTAGAAGTCTTAAAAAGTAAA
GAGTGCTGTTCAGTTGGAAGAGTGCCCAACTAACAGACATGAGTCCTAGA
TTTGATAGCCACATAAACCAGGGGTAGAAGCACGTAACTAGTCCCGGCAC
TGTGTGATGGAAGAGGAGATCATAAATTCAACCATCCTTGACCAGAGACC
TTGTCTCTAAAACAAAACACTCTAAATTGTAGTAGTAACAAAAGAGGCAA
CATTATTAAGAAATGGAGAGTCAGGCCTGGTGGTGCATGCTTTTAATCTC
GGCATTAGGAATTTTGAGGCAAACAGATCTCTGTGAGTTTGAGGCTACAT
AGGGAGTTTCGAGCCAGCCAGGACTAGATAGAGTCCCTCTCTGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGGAGGAAAGAAAA
ANAGNANGGANGGGNAAGGNANGGAGGGNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_j14.b1 MSMg01no530_j14.b1 CHROMAT_FILE:
MSMg01no530_j14.b1 PHD_FILE: MSMg01no530_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:58 2005
         (508 letters)



>mm_chr13_64371120_64372027
          Length = 908

 Score =  930 bits (481), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaccccattccactcagcgtgctttgttgttactgtttttgttttgttttaaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaattcccaccccaatccactcagcgtgctttgttgttactgtttttgttttgttttaaa 533

                                                                       
Query: 65  attgaactgtatttctgatgtaccatgaaaaccaaatctaaagacggtgaactgtgcacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 attgaactgtatttctgatgtaccatgaaaaccaaatctaaagacggtgaactgtgcacc 473

                                                                       
Query: 125 aaatgccctgagatactaaaaatgccagaggaagcttcaattagttaaggaaccagggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaatgccctgagatactaaaaatgccagaggaagcttcaattagttaaggaaccagggag 413

                                                                       
Query: 185 aaaagaggtcttgagtttttagtgtgttgaaaactgtaagactcggaattgggggaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaagaggtcttgagtttttagtgtgttgaaaactgtaagactcggaattgggggaaatc 353

                                                                       
Query: 245 agtgagaaaaatcaaaggacaaaggaattttatctttctatgaacctctttggtgccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agtgagaaaaatcaaaggacaaaggaattttatctttctatgaacctctttggtgccaga 293

                                                                       
Query: 305 gttccaaagcttttttcaattatcaaataattaaaatagagccttccttaaatgagcatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gttccaaagcttttttcaattatcaaataattaaaatagagccttccttaaatgagcatg 233

                                                                       
Query: 365 caaaggttccttattttgttttcttgggnttttttttttttttttttttttgggcctttc 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct: 232 caaaggttccttattttgttttcttgggtttttttttttttttttttttttggtcttttc 173

                                                                       
Query: 425 ttttctctgcttcgattctcttctcttcttggcttctcttctctctctctctctctctct 484
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 172 ttttctctgcttcgattctcttctcttcttgtcttctcttctctctctctctctctctct 113

                               
Query: 485 ctctctctctctctctctct 504
           ||||||||||||||||||||
Sbjct: 112 ctctctctctctctctctct 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_j14.g1 MSMg01no530_j14.g1 CHROMAT_FILE:
MSMg01no530_j14.g1 PHD_FILE: MSMg01no530_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:58 2005
         (659 letters)



>mm_chr13_64194758_64195816
          Length = 1059

 Score = 1245 bits (644), Expect = 0.0
 Identities = 653/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaatcaaacttagagataaggaaaacaactttgaaagacagcaaaaactgtttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaatcaaacttagagataaggaaaacaactttgaaagacagcaaaaactgtttttca 260

                                                                       
Query: 61  cttctctaagtgagtggtttctggtctcagggtttcagaagagacactaaaggatgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctctaagtgagtggtttctggtctcagggtttcagaagagacactaaaggatgttct 320

                                                                       
Query: 121 aacaatagtctgggagcccccgatgtcatgttctagaagtcttaaaaagtaaagagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaatagtctgggagcccccgatgtcatgttctagaagtcttaaaaagtaaagagtgct 380

                                                                       
Query: 181 gttcagttggaagagtgcccaactaacagacatgagtcctagatttgatagccacataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcagttggaagagtgcccaactaacagacatgagtcctagatttgatagccacataaa 440

                                                                       
Query: 241 ccaggggtagaagcacgtaactagtcccggcactgtgtgatggaagaggagatcataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaggggtagaagcacgtaactagtcccggcactgtgtgatggaagaggagatcataaat 500

                                                                       
Query: 301 tcaaccatccttgaccagagaccttgtctctaaaacaaaacactctaaattgtagtagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaccatccttgaccagagaccttgtctctaaaacaaaacactctaaattgtagtagta 560

                                                                       
Query: 361 acaaaagaggcaacattattaagaaatggagagtcaggcctggtggtgcatgcttttaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaaagaggcaacattattaagaaatggagagtcaggcctggtggtgcatgcttttaat 620

                                                                       
Query: 421 ctcggcattaggaattttgaggcaaacagatctctgtgagtttgaggctacatagggagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcggcattaggaattttgaggcaaacagatctctgtgagtttgaggctacatagggagt 680

                                                                       
Query: 481 ttcgagccagccaggactagatagagtccctctctgaaagaaagaaagaaagaaagaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcgagccagccaggactagatagagtccctctctgaaagaaagaaagaaagaaagaaag 740

                                                                       
Query: 541 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaag 800

                                                                   
Query: 601 aaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 656
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |