BAC Information

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BAC

Clone NameMSMg01-530L12
Chromosome13 (Build37)
Map Location 66,826,175 - 66,826,808
singlet/doubletsinglet
Overlap geneLOC666027
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530L12.T7 (MSMg01no530_l12.b1)MSMg01-530L12.TJ (MSMg01no530_l12.g1)
ACCAG599290AG599291
length763781
length of high quality
(start - end)		676 (48 - 723)634 (80 - 713)
definitionCHROMAT_FILE: MSMg01no530_l12.b1 PHD_FILE: MSMg01no530_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:08 2005CHROMAT_FILE: MSMg01no530_l12.g1 PHD_FILE: MSMg01no530_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACTGAAGAATAAAAATTTTTACTGAACTCTTCTTCACCCCAG
AGCCCGACCCCTCCCATCTAGAGATTGTTCCCGGAACACTCCTAAACTCT
TCACCCCAGAATGCATTCCTGAACTCCTCACCCTAAAGTTCGAATCCTCC
CAACTAAAAACTGTTCCAAGAACATTTTTGAGATAGGGGCCTCCTGAAAC
AACCTCAAAATGAACCGGGTACATTGCCAAATGATAGGACATGACCCCTT
AGTTACGTAGATTCCCTTGGCAGAACCCCTTGTCCCTTGGCAGAACCCCC
TAGTGATGTAAACTTGTACTTTCCCTGCCCAGCTCTCCCCCCTTTGAGTT
TTACTATATAAGCCTGTGAAAAATTTTGGCTGGCCGTCGATTCTCCTCTA
CACCACTAGGTGCATGAGTTTCGACCCCAGAGCTCTGGTCTATGTTCCAT
GTGCTTTCTTGCTGCTGTTGTTCTATTAAATCTTGCCTTCTACATTTTGA
GTACGGTCTCAGTGTCTTCTTGGGTCCGCGGCTGTCCCGGGGCTTGAGTG
CTTGAGTGAGGGTCTCCCTTCGGGGGTCTTTCATTTTGGTGCATTGGCCG
GGAATCAGCACGACCACCCAGAGGTCCTAGACCCACTTAGAGGTAAGATT
CTTTGTTCTGTTTTGGTCTGATGTCTGTGTTCTGTTTCTAAGTTTGGTGC
GATCGCAGTTTCG

NNGGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAAGCAGGCCATAATGT
CAGTGAAAGAATGAACTTGCCAAGAAGAGTGAGGGCAAGCAGGCAAAGAT
CAAGTTTCCTTTTTCCACATTCTTTATAGGCTGCCACCAGAAGATGTGGC
CCAGGTTTAAAGGTGCATCTTCTCAAAAAGACCTGAATTTAGGGTGAGTC
TTCACACTTCAACTGATTAATCAAGAAAAGTCTTTCACAGGTGTACTCAG
TCACTTGGATTTTAGTTAATTCTAGATGTAGTCAACTTGACAATCAAAAA
TACCAGCCTGAGCTACATGACATTCTATCTCAAAATAAAGGATATAAAAT
AGAGACAGATGTATCTCTCAATGGGTAGAGGTGTTTGCTGCCAAGCTGAC
AACCTGAACATGACTCCCAGGACCCACGTGATAGAAGGAAAAAAAAATCA
ACTAATATGAATTGTCCTCTGACCTCCATACATATGGACACATTAATTAA
TTAAAATGCACTAACATATTTAAAAAATTAAAAAGTAGTAATTACATCAG
CACACAACTACCATATTTTAACAGAAAAAAATTATAAATTAGTAATTAGA
GGAAAGTTCCACCTTAATATTTTGTACCATCATTCTAGACAACTGTTTAG
TCAAAAAAGAGATTTAAAAGAAAAATCCTTGGGACTGGGTAGATAAGATA
GCTCAGTGATAAACAGTGAGTATTGCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_l12.g1 MSMg01no530_l12.g1 CHROMAT_FILE:
MSMg01no530_l12.g1 PHD_FILE: MSMg01no530_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:08 2005
         (634 letters)



>mm_chr13_66825975_66827008
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagaagcaggccataatgtcagtgaaagaatgaacttgccaagaagagtgagggcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagaagcaggccataatgtcagtgaaagaatgaacttgccaagaagagtgagggcaag 260

                                                                       
Query: 61  caggcaaagatcaagtttcctttttccacattctttataggctgccaccagaagatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggcaaagatcaagtttcctttttccacattctttataggctgccaccagaagatgtgg 320

                                                                       
Query: 121 cccaggtttaaaggtgcatcttctcaaaaagacctgaatttagggtgagtcttcacactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaggtttaaaggtgcatcttctcaaaaagacctgaatttagggtgagtcttcacactt 380

                                                                       
Query: 181 caactgattaatcaagaaaagtctttcacaggtgtactcagtcacttggattttagttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgattaatcaagaaaagtctttcacaggtgtactcagtcacttggattttagttaa 440

                                                                       
Query: 241 ttctagatgtagtcaacttgacaatcaaaaataccagcctgagctacatgacattctatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctagatgtagtcaacttgacaatcaaaaataccagcctgagctacatgacattctatc 500

                                                                       
Query: 301 tcaaaataaaggatataaaatagagacagatgtatctctcaatgggtagaggtgtttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaataaaggatataaaatagagacagatgtatctctcaatgggtagaggtgtttgct 560

                                                                       
Query: 361 gccaagctgacaacctgaacatgactcccaggacccacgtgatagaaggaaaaaaaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaagctgacaacctgaacatgactcccaggacccacgtgatagaaggaaaaaaaaatc 620

                                                                       
Query: 421 aactaatatgaattgtcctctgacctccatacatatggacacattaattaattaaaatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactaatatgaattgtcctctgacctccatacatatggacacattaattaattaaaatgc 680

                                                                       
Query: 481 actaacatatttaaaaaattaaaaagtagtaattacatcagcacacaactaccatatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actaacatatttaaaaaattaaaaagtagtaattacatcagcacacaactaccatatttt 740

                                                                       
Query: 541 aacagaaaaaaattataaattagtaattagaggaaagttccaccttaatattttgtacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagaaaaaaattataaattagtaattagaggaaagttccaccttaatattttgtacca 800

                                             
Query: 601 tcattctagacaactgtttagtcaaaaaagagat 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 tcattctagacaactgtttagtcaaaaaagagat 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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