TTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAGGGTCTCTCGTCTTTATGATTCTCCAGATTTCTTC
AATCTTTGTCCTTTTTTATTTCTAGTTTCCATTCATTTTTCACTTGTTCA
AGGTTTATTTGGTGCTTTGATTAGTGTGACACTTGGGTAGTTGGTTGCAT
CATCCATATACAGAATTTTACTTTTTGTATATTGTTGAAATGTACACTAC
AGACACATGTATTACACAAAAAATATCCTTTAGAAGAGTTATGCACCAGA
TATGCATAATGGATTTACCCACTAAAGCCAGGCTATAATTAGCTGGAACC
TCCTTGGTCTAAACATTTTTGGTGAGGTTGAGCAACACAGTGACACAGCA
TGCTCACAGGAACCCCATGAAAGAAGGAAAAAGAATGCCAGATGAGTGGT
ATACATAAAATCTTCACCGAAACTATAGAAGAAAACTTCCTAAAACACTC
CCAACAAAGAAATTATATACTGGCTAGATATATAAGCACACAGACCATCA
AATAGATAGGACTAGAAGGGAAAATAAATATATTATATAATAGTTAAAAT
GTTGAATATACAGAAAACAAATCACAAATTTGAACAAACACATCAGAATA
ACATGTGAGTTCTCAATGGTAGATTTAAAAGACACAAGTTTCCAAGTTTC
AACTTTCAGAGGTGCCAACCGAGACTAATGAAGTCAGCAAAATAAACTGA
CAGAG

NNNNCCCCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGCTCGGTAC
CCCAATTACAATAGGATTGTTTGGTTCTCTCTACTCTACTTCTTGAGTTC
TTCGTATATTTTGGATATTAGCCCTTTATTGGAGAAGCACTCTCATACAG
GCAAAGGGGGGGGGTAGGGCAGATTTTGGATGGTGTGTGGATGGAGGGGG
TAACCAGGAAATGGGAGATCACTTGAGATGTAAACAAATGGAAGGATTAA
TAAAAGTACTATGTTCATAAGTGAAATCGGTCTATATTTTTTACTTTGTT
GGGTATTATATGGTTAATGTATCAGGGTAATTATGGCCTTATCAAATGAA
TAGACAATGACCTTTCTGCTTCTTTTTTGTGACATACTTTTAGGAGTATT
GACATTAACTCATTTGAAAACTGGGTGGAAATTTTGCCATAAAACTTCCC
GTTTTTTGGTGTTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTCTTGG
CACGGGATTTAAAAAAATGGTCAATTTTAACATTTAACTTTGCTAAGTGA
TACGTATTGAGAAAATTATAATATTTTCTTTTTTTACGTCTTCCGATTTG
AAGGAGTACAGGCCTTAAAATGCTATCCTCTGATTCTGTGAAATATCTGG
GTGTCTATTTCTTTTTCATCTCCAAATCTCTGAATTTGAATCCTCCCTCT
CTGCTTCTTAGATAAT

Query= MSMg01no530_o20.b1 MSMg01no530_o20.b1 CHROMAT_FILE:
MSMg01no530_o20.b1 PHD_FILE: MSMg01no530_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:24 2005
         (703 letters)



>mm_chr13_61314774_61315876
          Length = 1103

 Score = 1075 bits (556), Expect = 0.0
 Identities = 568/572 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttagggtctctcgtctttatgattctccagatttcttcaatctttgtcctttt 63
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggaattcttagggtcacaagtctttatgattctccagatttcttcaatctttgtcctttt 513

                                                                       
Query: 64  ttatttctagtttccattcatttttcacttgttcaaggtttatttggtgctttgattagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttatttctagtttccattcatttttcacttgttcaaggtttatttggtgctttgattagt 453

                                                                       
Query: 124 gtgacacttgggtagttggttgcatcatccatatacagaattttactttttgtatattgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtgacacttgggtagttggttgcatcatccatatacagaattttactttttgtatattgt 393

                                                                       
Query: 184 tgaaatgtacactacagacacatgtattacacaaaaaatatcctttagaagagttatgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgaaatgtacactacagacacatgtattacacaaaaaatatcctttagaagagttatgca 333

                                                                       
Query: 244 ccagatatgcataatggatttacccactaaagccaggctataattagctggaacctcctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccagatatgcataatggatttacccactaaagccaggctataattagctggaacctcctt 273

                                                                       
Query: 304 ggtctaaacatttttggtgaggttgagcaacacagtgacacagcatgctcacaggaaccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggtctaaacatttttggtgaggttgagcaacacagtgacacagcatgctcacaggaaccc 213

                                                                       
Query: 364 catgaaagaaggaaaaagaatgccagatgagtggtatacataaaatcttcaccgaaacta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 212 catgaaagaaggaaaaagaatgccagatgagtggtatacataaaatcttcaccaaaacta 153

                                                                       
Query: 424 tagaagaaaacttcctaaaacactcccaacaaagaaattatatactggctagatatataa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tagaagaaaacttcctaaaacactcccaacaaagaaattatatactggctagatatataa 93

                                                                       
Query: 484 gcacacagaccatcaaatagataggactagaagggaaaataaatatattatataatagtt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  gcacacagaccatcaaatagataggactagaagggaaaataaatatattatataatagtt 33

                                           
Query: 544 aaaatgttgaatatacagaaaacaaatcacaa 575
           ||||||||||||||||||||||||||||||||
Sbjct: 32  aaaatgttgaatatacagaaaacaaatcacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)