CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAAATCCTGAAGGGAGAGAGAAAGGGAAGGAAAGATCGAGGA
TGATTGACAACTTTGGATCCATTTGATGATTGTATCCATTTCAGATTCTC
TGCTGACAATAGAAGCCTGATTGGACACCACGGACTTTATTGGGAAGTGG
ATGGAATATAATATGCTTTGTACTGCATTCCCTGTTTGAGTTGATTGGAT
GAAAGACAAATTTCACATGGAGGAGAGTCTGAATCCTGTCGCTGTTGCAA
TTACACTGAGCACCAGTGGGGAAATGCCCTGTTGCTCCTGTGATCTGCTG
ACAATTGGACCTTTTTATCCCCAAGCTGTTGCCTTCAGTACTTCATGTGA
TTTCTTTTCAATAAATTATATTACATAAGCATCCTTAATAGTATATTAAG
TAATGGAGTCTGCAAAGCCTTGTTTGCTTCAAAATAGAGTTCCCTTTCTT
TTCTTTTCTTTCTTTTTCTATTTTTCTTTCTTTCTTTCTTTTTTTTTTTT
TTTTTTGGTCCAGTAACAGCTGTTAAGATTAGGTGCTATAACACGTCAAT
TGAGAATCATTTCCTTTCTTTCTTCTATTTTAAGTGATGACATAGATTTT
AAAAGCACACCAGTAAACCAAACCATTAATGTTTCCTGTTGTGAGCAAAA
ATGAAGACTTTGTGATTGTTGAGATTCAGAGACCGTATCTTCTCTGTGAT
GAATTTTTAAN

CCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
GATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAG
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTAT
GCCCCTCCTTAAN

Query= MSMg01no531_n14.b1 MSMg01no531_n14.b1 CHROMAT_FILE:
MSMg01no531_n14.b1 PHD_FILE: MSMg01no531_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:37 2005
         (671 letters)



>mm_chr13_116614356_116615426
          Length = 1071

 Score = 1183 bits (612), Expect = 0.0
 Identities = 648/668 (97%), Gaps = 16/668 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaaatcctgaagggagagagaaagggaaggaaagatcgaggatgattgacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaaatcctgaagggagagagaaagggaaggaaagatcgaggatgattgacaa 263

                                                                       
Query: 64  ctttggatccatttgatgattgtatccatttcagattctctgctgacaatagaagcctga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttggatccatttgatgattgtatccatttcagattctctgctgacaatagaagcctga 323

                                                                       
Query: 124 ttggacaccacggactttattgggaagtggatggaatataatatgctttgtactgcattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttggacaccacggactttattgggaagtggatggaatataatatgctttgtactgcattc 383

                                                                       
Query: 184 cctgtttgagttgattggatgaaagacaaatttcacatggaggagagtctgaatcctgtc 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgtttgagttgattgggtgaaagacaaatttcacatggaggagagtctgaatcctgtc 443

                                                                       
Query: 244 gctgttgcaattacactgagcaccagtggggaaatgccctgttgctcctgtgatctgctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgttgcaattacactgagcaccagtggggaaatgccctgttgctcctgtgatctgctg 503

                                                                       
Query: 304 acaattggacctttttatccccaagctgttgccttcagtacttcatgtgatttcttttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaattggacctttttatccccaagctgttgccttcagtacttcatgtgatttcttttca 563

                                                                       
Query: 364 ataaattatattacataagcatccttaatagtatattaagtaatggagtctgcaaagcct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataaattatattacataagcatccttaatagtatattaagtaatggagtctgcaaagcct 623

                                                                       
Query: 424 tgtttgcttcaaaatagagttccctttcttttcttttctttctttttctatttttctttc 483
           |||||||||||||||||| |||||||||||||||||     ||||||||||||||||| |
Sbjct: 624 tgtttgcttcaaaatagacttccctttcttttcttt-----ctttttctatttttctt-c 677

                                                                       
Query: 484 tttctttcttttttttttttttttttggtccagtaacagctgttaagattaggtgctata 543
                  ||||||||||||||||   |||||||||||||||||||||||||||||||| |
Sbjct: 678 -------cttttttttttttttt---ggtccagtaacagctgttaagattaggtgctaga 727

                                                                       
Query: 544 acacgtcaattgagaatcatttcctttctttcttctattttaagtgatgacatagatttt 603
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acacatcaattgagaatcatttcctttctttcttctattttaagtgatgacatagatttt 787

                                                                       
Query: 604 aaaagcacaccagtaaaccaaaccattaatgtttcctgttgtgagcaaaaatgaagactt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaaagcacaccagtaaaccaaaccattaatgtttcctgttgtgagcaaaaatgaagactt 847

                   
Query: 664 tgtgattg 671
           ||||||||
Sbjct: 848 tgtgattg 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)