Query= MSMg01no532_h02.b1 MSMg01no532_h02.b1 CHROMAT_FILE:
MSMg01no532_h02.b1 PHD_FILE: MSMg01no532_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:22 2005
(577 letters)
>mm_chr13_101966055_101967026
Length = 972
Score = 1002 bits (518), Expect = 0.0
Identities = 558/574 (97%), Gaps = 5/574 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttattttctccatgtggggacgggggttgaggtagggtggttgctcactagt 63
|||||||||||||| || |||||||||||||||||| |||||||||| |||||||||||
Sbjct: 204 ggaattccttatttactgtatgtggggacgggggttggggtagggtgggtgctcactagt 263
Query: 64 gcagaggccagagatcaacattaggtgtccacctctattgttctccctggtatttttttg 123
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 gcagaggccagagatcgacattaggtgtccacctctattgttctccctggtattgttttg 323
Query: 124 ggatggggtcttttggcgaatccccagcttgccatttcatgtaggttggtaagcaagccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggatggggtcttttggcgaatccccagcttgccatttcatgtaggttggtaagcaagccc 383
Query: 184 ccagcacagtctgtctccagtccccagggctggggttacaagtactcattgctatacctg 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 ccagcacagtctgtctccagtccccagggctggggttacaagtactcactgctatacctg 443
Query: 244 acttgtatgtgggtgccagtgatctgaactcatgtcctcccacatctgcagcaagcactt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttgtatgtgggtgccagtgatctgaactcatgtcctcccacatctgcagcaagcactt 503
Query: 304 tagccactcatgtagctctccagctcctgaaattccttattatagatcatatatccttca 363
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagccactcacgcagctctccagctcctgaaattccttattatagatcatatatccttca 563
Query: 364 tatttattttatcatgtctgtttgcccaggttgagattggagaatggaatatgcatagaa 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 tatttattttatcatgtctgtttgcccatgttgagattggagaatggaatatgcatagaa 623
Query: 424 tagtaacaacagatccatgggtataattactcttgctattaaaagaaggtttgccagcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagtaacaacagatccatgggtataattactcttgctattaaaagaaggtttgccagcaa 683
Query: 484 atgttatgtgaatgcatatcaattgttgaagagttgaatatactgaccagagtatatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgttatgtgaatgcatatcaattgttgaagagttgaatatactgaccagagtatatgaa 743
Query: 544 tgttgtagagtgttacatggatgctaagaagaaa 577
|||||| |||||||||||||||||||||||
Sbjct: 744 tgttgt-----gttacatggatgctaagaagaaa 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 972
Length adjustment: 10
Effective length of query: 567
Effective length of database: 962
Effective search space: 545454
Effective search space used: 545454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_h02.g1 MSMg01no532_h02.g1 CHROMAT_FILE:
MSMg01no532_h02.g1 PHD_FILE: MSMg01no532_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:22 2005
(547 letters)
>mm_chr13_102123356_102124302
Length = 947
Score = 590 bits (305), Expect = e-172
Identities = 320/327 (97%), Gaps = 5/327 (1%)
Strand = Plus / Minus
Query: 226 gcaggaagattggaagttcatggtcatactcagatatacagtaagtccatggccagtttg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 gcaggaagattggaagttcatggtcatactcagatatacagtaagtccatggccagtttg 888
Query: 286 ggatatataagacaatcaatcaatttctctc-ccccccttcaataactcctcctctctcc 344
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 887 ggatatataagacaatcaatcaatttctctctccccccttcaatacctcctcctctctcc 828
Query: 345 ttcctgctctccatctctctaaacacacacacacacacacacacacacacacacacacac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ttcctgctctccatctctctaaacacacacacacacacacacacacacacacacacacac 768
Query: 405 acacacac----acacacactacttatagttttactttaaatatagttttatggtactgg 460
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 acacacacacatacacacactacttatagttttactttaaatatagttttatggtactgg 708
Query: 461 tggttaaatccatgctaaaagctatataccaccaagacatccttgaaaggcataatgaag 520
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 707 tggttaaatccatgctaaaagctatataccaccaagacatccttgaaaggcagaatgaag 648
Query: 521 caattgtttataaggcatgaaatcatg 547
|||||||||||||||||||||||||||
Sbjct: 647 caattgtttataaggcatgaaatcatg 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
