Query= MSMg01no532_h23.b1 MSMg01no532_h23.b1 CHROMAT_FILE:
MSMg01no532_h23.b1 PHD_FILE: MSMg01no532_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:26 2005
(544 letters)
>mm_chr13_54881886_54882829
Length = 944
Score = 859 bits (444), Expect = 0.0
Identities = 501/544 (92%), Gaps = 38/544 (6%)
Strand = Plus / Plus
Query: 1 cctcactgagctactctgggaagacaggccaggctgactttggctaagagccacattccc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcactgagctactctgggaagtcaggccaggctgactttggctaagagccacattccc 260
Query: 61 agcaggcttagggacttgcctttagtgctttccttagtcaccacaatccagtggctgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaggcttagggacttgcctttagtgctttccttagtcaccacaatccagtggctgctc 320
Query: 121 caggctggtcaatgtaaaaggtggtgttatgcctggaagccaccctggtgccaggaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggctggtcaatgtaaaaggtggtgttatgcctggaagccaccctggtgccaggaagag 380
Query: 181 gtcacggctctgatgcagctgagaccatgccctgccctggagagagctgctcccttactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcacggctctgatgcagctgagaccatgccctgccctggagagagctgc---------- 430
Query: 241 tctaccaaatacagatccgcagcatcgccctgcctggcctcctccagggctgcctgtgct 300
||||||||||||||||||||||||||||||||||
Sbjct: 431 --------------------------gccctgcctggcctcctccagggctgcctgtgct 464
Query: 301 ggaggcattccacagtactgttgaagggctctattcccaccttgaatttggatcctggta 360
|||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 465 ggaggcattccacaatactgttgaagggctctattcctgccttgaatttggattctggta 524
Query: 361 gttgaggggaacacagcaggcctggggttgagccagtttcagacctgagccttaagggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gttgaggggaacacagcaggcctggggttgagccagtttcagacctgagccttaagggtc 584
Query: 421 tggcagcatgtacttcctgtctctggggacacctgccttgggaacccagccaccacactg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 585 tggcagcatgtacttcctgtctctggggacacctgccttgggaacccagccaccac--tg 642
Query: 481 tgaaagatgagtagtcacatggagcggaggcttctgcctacagttacactagctactcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgaaagatgagtagtcacatggagcggaggcttctgcctacagttacactagctactcca 702
Query: 541 tgtg 544
||||
Sbjct: 703 tgtg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_h23.g1 MSMg01no532_h23.g1 CHROMAT_FILE:
MSMg01no532_h23.g1 PHD_FILE: MSMg01no532_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:26 2005
(450 letters)
>mm_chr13_55069934_55070783
Length = 850
Score = 832 bits (430), Expect = 0.0
Identities = 445/450 (98%)
Strand = Plus / Minus
Query: 1 cagatgagtccatttccgagacattttttcacagggctgcctctatactcccactcaggt 60
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 650 cagatgagtccatttctgagacattttttcacagggctgcctctatattcccactcaggt 591
Query: 61 gcatgtgaagttatgctcatgtctacaccgccctcctcccctcactcagccacacatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcatgtgaagttatgctcatgtctacaccgccctcctcccctcactcagccacacatctg 531
Query: 121 cacattgggagctcagagctggcctctgcagagcccagttagctcgtaggtttgacagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cacattgggagctcagagctggcctctgcagagcccagttagctcgtaggtttgacagga 471
Query: 181 gggaaggagccggagccaggcaggaaatgccagcacaggagagaaacgcatgagaggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gggaaggagccggagccaggcaggaaatgccagcacaggagagaaacgcatgagaggcta 411
Query: 241 cggagcatctgcaactatgggaaaggatcaggggctctcctgaaatttggacctcggtga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tggagcatctgcaactatgggaaaggatcaggggctctcctgaaatttggacctcggtga 351
Query: 301 ctggagaatcttggatgaaggctgcttctgactaccataggggcccaatggctgctaccc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 350 ctggagaatcttggatgaaggctgcttctgactaccacaggggcccaatggctgctaccc 291
Query: 361 aagagcatttgtaggggacttgcatactgcattggccagcggccactgttgacagggaga 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 290 aagagcatttgtaggggacttgcatactgcattggccagtggccactgttgacagggaga 231
Query: 421 gacaggactggcaggaagccctgagtggac 450
||||||||||||||||||||||||||||||
Sbjct: 230 gacaggactggcaggaagccctgagtggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
