Query= MSMg01no532_l03.b1 MSMg01no532_l03.b1 CHROMAT_FILE:
MSMg01no532_l03.b1 PHD_FILE: MSMg01no532_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:41 2005
(704 letters)
>mm_chr13_4463807_4464910
Length = 1104
Score = 1307 bits (676), Expect = 0.0
Identities = 694/700 (99%)
Strand = Plus / Plus
Query: 5 gaattctcagtttggctctgtgctccattttttactggattatttgtcccccaccctttg 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtttggctctgtgctccattttctactggattatttgtcccccaccctttg 264
Query: 65 ggttaaatcagcttacattagcaaagggaaacttctaaatttcagaggataatggatgtg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ggttaaatcagcttacattagcaaagggaaacttctaaatttcagaggataatgtatgtg 324
Query: 125 gtgagataataaaaaaaatacttaacagttcaagagatatataatttaactaattcagag 184
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgagataataagacaaatacttaacagttcaagagatatataatttaactaattcagag 384
Query: 185 ttattcagaaaatatgaccaaatatgaatattattcaatgttagatttccagctttaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattcagaaaatatgaccaaatatgaatattattcaatgttagatttccagctttaggt 444
Query: 245 ctgatagtcacaaactgggaagctgccacttattgcctcacatcaaaaaagttaacaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgatagtcacaaactgggaagctgccacttattgcctcacatcaaaaaagttaacaaac 504
Query: 305 caatgcaacccttcctaggactatcagaatatcaggccatggatcaaatttcttatctaa 364
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 caatgcaacccttcctaggattatcagaatatcaggccatggatcaaattccttatctaa 564
Query: 365 aaatcaaggagatcagaaacatagccatcatggcatacatagacaatatataattttctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatcaaggagatcagaaacatagccatcatggcatacatagacaatatataattttctt 624
Query: 425 aacgtccttaataagaaagaaaatacaataactaatgatttaagatttctaaagcttact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacgtccttaataagaaagaaaatacaataactaatgatttaagatttctaaagcttact 684
Query: 485 atacctgagagaataggcagatgcaacccatcatctctcttgttttctatggtcaggaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atacctgagagaataggcagatgcaacccatcatctctcttgttttctatggtcaggaga 744
Query: 545 taatacacataacaattctcccaccattcttctggactgaaccgttgagtagcatgttac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taatacacataacaattctcccaccattcttctggactgaaccgttgagtagcatgttac 804
Query: 605 taggaggtttaaagtacagtcaatgggaacaagtgtactaattgcttgtttgacttcagg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taggaggtttaaagtacagtcaatgggaacaagtgtactaattgcttgtttgacttcagg 864
Query: 665 acacttcctctgccttctactttaatactcagcagaaggg 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acacttcctctgccttctactttaatactcagcagaaggg 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no532_l03.g1 MSMg01no532_l03.g1 CHROMAT_FILE:
MSMg01no532_l03.g1 PHD_FILE: MSMg01no532_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:41 2005
(237 letters)
>mm_chr13_4591402_4592047
Length = 646
Score = 352 bits (182), Expect = e-101
Identities = 230/246 (93%), Gaps = 9/246 (3%)
Strand = Plus / Minus
Query: 1 cataaaactgatggtccagaacttgttcctgtctgtattatgagaa-ataaagtatcacc 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 446 cataaaactgatggtccagaacttgttcctgtctgtattatgagaatataaagtatcacc 387
Query: 60 attcttccctagccaactgttggttggactaaagaaaatgggggagccccaatcctctgt 119
||| || |||||||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 386 attttttcctagccaactgttagttggaataaagaaaatgtgggagccccaatcctctgt 327
Query: 120 gtaaagacactgactatcccttgagaacatgctctcaa-gcaattattttaagaa-cata 177
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct: 326 gtaaagacactgactatcccgtgagaacatgctttcaaagcaattattttaagaaacata 267
Query: 178 cataa-tatttctttcaggc-ac-gccatgtct-ccctatgaaa-tctaa-taccccctt 231
||||| |||||||||||||| || ||||||||| |||||||||| ||||| |||||||||
Sbjct: 266 cataaatatttctttcaggccacagccatgtctaccctatgaaaatctaaataccccctt 207
Query: 232 cttagc 237
||||||
Sbjct: 206 cttagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 646
Length adjustment: 9
Effective length of query: 228
Effective length of database: 637
Effective search space: 145236
Effective search space used: 145236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
