Query= MSMg01no532_l22.b1 MSMg01no532_l22.b1 CHROMAT_FILE:
MSMg01no532_l22.b1 PHD_FILE: MSMg01no532_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:45 2005
(613 letters)
>mm_chr13_110754087_110755094
Length = 1008
Score = 1123 bits (581), Expect = 0.0
Identities = 600/609 (98%), Gaps = 5/609 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcatttttgaatggtagaaacagaaactgttgcaagcttcatgaaagcctta 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 699 gaattctttcatttttgaatggtagaaacagaaactgttgcaagcttcgtgaaagcctta 640
Query: 65 ggtcttattcttcctgaccaactcagctgattcttccaccgatcttgtctagtttcttgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ggtcttattcttcctgaccaactcagctgattcttccaccgatcttgtctagtttcttgg 580
Query: 125 acaagcacatgccagcccatgatcagccgaagctcctatacatgtctctagagatttttt 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acaagcacatgtcagcccatgatcagccgaagctcctatacatgtctctagagatttttt 520
Query: 185 ttgtgtgtgtgtgcaataatatactcttcctcaccttcagctttttcaccctccttagac 244
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 tt-----tgtgtgcaataatatactcttccccaccttcagctttttcaccctccttagac 465
Query: 245 tcccaatgtgtttcctccatgcaatgaaaaggtgaagctctttggtaccccccaacactg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcccaatgtgtttcctccatgcaatgaaaaggtgaagctctttggtaccccccaacactg 405
Query: 305 taacccatagtacagcctgaacatttggtctagtacctctaccccaatctctaccacagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 taacccatagtacagcctgaacatttggtctagtacctctaccccaatctctaccacagc 345
Query: 365 ctgagaactctatcacaactcccaccaatccacagcgcatcctgggaactctgtctggta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgagaactctatcacaactcccaccaatccacagcgcatcctgggaactctgtctggta 285
Query: 425 atgcctcctacccctccaccctgcaacctgtatcacagcctgggcactcagcctcgtacc 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acgcctcctacccctccaccctgcaacctgtatcacagcctgggcactcagcctcgtacc 225
Query: 485 cagccccaacctcctcctccccctggaataagcaggatagctggactagacatattagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cagccccaacctcctcctccccctggaataagcaggatagctggactagacatattagtg 165
Query: 545 agcttgagttcatctgagatactctgccttaatgaataaagtgaaagtggatgaggaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 agcttgagttcatctgagatactctgccttaatgaataaagtgaaagtggatgaggaaga 105
Query: 605 ctcctgggt 613
|||||||||
Sbjct: 104 ctcctgggt 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1008
Length adjustment: 10
Effective length of query: 603
Effective length of database: 998
Effective search space: 601794
Effective search space used: 601794
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_l22.g1 MSMg01no532_l22.g1 CHROMAT_FILE:
MSMg01no532_l22.g1 PHD_FILE: MSMg01no532_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:45 2005
(614 letters)
>mm_chr13_110588354_110589367
Length = 1014
Score = 1094 bits (566), Expect = 0.0
Identities = 600/614 (97%), Gaps = 5/614 (0%)
Strand = Plus / Plus
Query: 1 ctgcaccaaggtacccttgtggtatttttaatagtgttgtttgatgctgtaggcagcttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgcaccaaggtacccttgtggtatttttaatagtgttgtttgatgctgtagccagcttt 260
Query: 61 tctgcggtttgagagttaaatgggatacagtgatgtggtgtgctgtaatagctcttagag 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 261 tctgcggtttgagagttaaatgggatacagtgatgtggtgtgctataatagctcttggag 320
Query: 121 gaatgttaagacaaattaaagtccaagtgagatagcacctgaaggaacctggtcctttaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgttaagacaaattaaagtccaagtgagatagcacctgaaggaacctggtcctt--- 377
Query: 181 aaaaaaaaaaaaaaaaaagatcctaacatcatagaagggcttaggagttctgaagaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 --aaaaaaaaaaaaaaaagatcctaacatcatagaagggcttaggagttctgaagaagtc 435
Query: 241 tttaattgaaaagaactatcttcctattggtcaaactgatgtttgcagctggcttctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttaattgaaaagaactatcttcctattggtcaaactgatgtttgcagctggcttctttg 495
Query: 301 cccaaggatggagttcactgttcttgcccatctgggtcttccctgcttgctttcctgcct 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cccaaggacggagttcactgttcttgcccatctgggtcttccctgcttgctttcctgcct 555
Query: 361 tatacacctgagcatgcatatcagtgtaggagaaaataatacaaagggaggtggggtcgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatacacctgagcatgcatatcagtgtaggagaaaataatacaaagggaggtggggtcgt 615
Query: 421 ggtgtataattaacaccttgacttaaagcatccactctgctagattaatgatcgccaagg 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 ggtgtataattaacaccttgagttaaagcatccactctgctagattaatgatctccaagg 675
Query: 481 ttaagcaattactaccacatctatcaaataggtctgacgtcagctagtcacattctcaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttaagcaattactaccacatctatcaaataggtctgacgtcagctagtcacattctcaca 735
Query: 541 ctcaggtccgagctgagcacaggcacagcaggatcccattgctgagctgcggtcaggttt 600
|||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 736 ctcaggtctgagctgagcacaggcacaccaggatcccattgctgagctgcagtcaggttt 795
Query: 601 tcctcgagcagtgg 614
||||||||||||||
Sbjct: 796 tcctcgagcagtgg 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
