Query= MSMg01no532_n14.b1 MSMg01no532_n14.b1 CHROMAT_FILE:
MSMg01no532_n14.b1 PHD_FILE: MSMg01no532_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:53 2005
(673 letters)
>mm_chr13_98754465_98755537
Length = 1073
Score = 1216 bits (629), Expect = 0.0
Identities = 659/669 (98%)
Strand = Plus / Plus
Query: 5 gaattcacttttgtaaatgaaacagactcttctaatgggagccctttcttgtagctacaa 64
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcacttttgaaaatgaaacagactcttctaatgggaaccctttcttgtagctacaa 264
Query: 65 gaataaaagtttattgtataaaagttgtatttctgcttccttacgttgctgctcttcctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaataaaagtttattgtataaaagttgtatttctgcttccttacgttgctgctcttcctc 324
Query: 125 ctaaggctgagatccagttactggcgttgttgaatacattgtaatttcaactctctcaag 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaggttgagatccagttactggcgttgttgaatacattgtaatttcaactctctcaag 384
Query: 185 ccctgggctaaatgtggaaggcagagactccattctgccttccttgtggagatgcctctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctgggctaaatgtggaaggcagagactccattctgccttccttgtggagatgcctctt 444
Query: 245 ggccctgtacatataggacaaaagtaatcctcagagtttactttaattaaatcctcttag 304
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 ggccctgtacacataggacaaaagtaattctcagagtttactttaattaaatcctcttag 504
Query: 305 gcccttgaaggaatatgcctggaacccattcttgtttgcaccatccctgagagcaacatt 364
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 505 gcccttgaaggaatatgcctggaatccactcttgtttgcaccatccctgagagcaacatt 564
Query: 365 ttattaaaacaagcattgcagaagtgagcacggaggtacgatttttttatcagaattaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttattaaaacaagcattgcagaagtgagcacggaggtacgatttttttatcagaattaaa 624
Query: 425 tctataacttgaccgatgtcccatgagaaaaagattctaccaagcttgggcaatgcggtt 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 tctataacttgaccgatgtcccatgagaaaaagattctaccaagcttgggaaatgcggtt 684
Query: 485 gtggaggtaggttgggactcgcctgcagctccttggcggtttacgtacttggactggctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggaggtaggttgggactcgcctgcagctccttggcggtttacgtacttggactggctg 744
Query: 545 gacgtctgctttggaattgaatgagttcgaagtcagatgccagcaggcagggcttacctt 604
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 gacgtctgctttggaattgaatgagttcgaagtcagatggcagcaggcagggcttacctt 804
Query: 605 cgctggtactgcacactgtgaagtctcgcactagccgggattttcctgaagagattttgg 664
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 cgctggtactgcacactgtgaagtcgcgcactagccgggattttcctgaagagattttgg 864
Query: 665 gtgatgagc 673
|||||||||
Sbjct: 865 gtgatgagc 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_n14.g1 MSMg01no532_n14.g1 CHROMAT_FILE:
MSMg01no532_n14.g1 PHD_FILE: MSMg01no532_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:53 2005
(539 letters)
>mm_chr13_98942832_98943771
Length = 940
Score = 1013 bits (524), Expect = 0.0
Identities = 536/540 (99%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 1 attagcatctctgcagactcaggccagcagtactgtcctttccagctgctggctggcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attagcatctctgcagactcaggccagcagtactgtcctttccagctgctggctggcttc 681
Query: 61 tactctctgtgtgtctgataattttttggccatcattcgctggtgttttctgagataagc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 tactctctgtgtgtctgataattttttggccatcattcgctggtgtttcctgagataagc 621
Query: 121 agcagagagctgtaaagtccccaggtgcacaggaatcccagcacaccctggctttgttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcagagagctgtaaagtccccaggtgcacaggaatcccagcacaccctggctttgttag 561
Query: 181 a-ggggggattgtcttctctaggctatgtgtgtgttcttctggtccttggcctgcttcga 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agggggggattgtcttctctaggctatgtgtgtgttcttctggtccttggcctgcttcga 501
Query: 240 tgcaggaatgaattgaaatgcaaagttgcttgaatactgatgtccagtaccactgggcct 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcaggaatgaattgaaatgcaaagttgcttgaatactgatgtccagtaccactgggccc 441
Query: 300 gggaaacccatctcagtgaaatatgaacaacatctgtacagtggcctattcagtccaatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggaaacccatctcagtgaaatatgaacaacatctgtacagtggcctattcagtccaatg 381
Query: 360 ctaattgtcaccgtttgaatggcattggacagcacatagaaaataggagtaaaaacgcct 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 ctaattgtcaccgtttgaatggcattggacagcacatagaaaataggagtgaaaacgcct 321
Query: 420 tcaacaaggcccttttcatggatggccctcacaatgtgcctgattctacagctttggaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaacaaggcccttttcatggatggccctcacaatgtgcctgattctacagctttggaca 261
Query: 480 aaggtccgtgttttctcttgtggttttgtcatgcttctagcttgtacaactagggtttgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggtccgtgttttctcttgtggttttgtcatgcttctagcttgtacaactagggtttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space: 491970
Effective search space used: 491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
