Query= MSMg01no533_b01.b1 MSMg01no533_b01.b1 CHROMAT_FILE:
MSMg01no533_b01.b1 PHD_FILE: MSMg01no533_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:11 2005
(670 letters)
>mm_chr13_91354704_91355773
Length = 1070
Score = 1137 bits (588), Expect = 0.0
Identities = 649/676 (96%), Gaps = 12/676 (1%)
Strand = Plus / Plus
Query: 5 gaattcagagattgataaaacagaatcatgtttttcatccctttccagtcttaggctcag 64
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 gaattcagagattgagaaaacagaatcatgtttttcatacctttccagtcttaggctcag 256
Query: 65 tcagtcctcaggagagggtgaggttccggctgctgtgcagctcagtgagctgtcatacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcagtcctcaggagagggtgaggttccggctgctgtgcagctcagtgagctgtcatacca 316
Query: 125 tgtatgaccactacccagatgatctcacccaactagacacaccacatattttcatgtgtt 184
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 317 tgtatgaccactacccagatgatctcacgcaactagacacaccacatattttcatgtgtc 376
Query: 185 ctttaatctaatgtgtttggaactagatctatgtatgtgtgggggttttagctttgtttt 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctttaatctaatatgtttggaactagatctatgtatgtgtgggggttttagctttgtttt 436
Query: 245 gttggcttg----------ttttggttttttgcggaagatatttcttttgatacatctgt 294
||||||||| |||| |||||||||||||||||||||||||||| |||| |
Sbjct: 437 gttggcttgtttttttttttttt--ttttttgcggaagatatttcttttgataaatctat 494
Query: 295 aagacagtgtgtattgaatcattattttatatataactgtttccctagatttaaggttac 354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aagacagtgtgtattgaatcactattttatatataactgtttccctagatttaaggttac 554
Query: 355 ttataaataaatatgcacacatatagaatagaacatgctataaatacacttaaacattaa 414
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttataaataaatatacacacatatagaatagaacatgctataaatacacttaaacattaa 614
Query: 415 atatccattatcactactgaaaggacgcatcttcatcttcatgttattcatgtttgtcct 474
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 615 atatcctttttcactactgaaaggacacatcttcatcttcatgttattcatgtttgtcct 674
Query: 475 tcctggggataattccgcaccactgaccatgagaagtagcaagtactgttagataaaggg 534
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcctggggataattccgcatcactgaccatgagaagtagcaagtactgttagataaaggg 734
Query: 535 aatggaactggagtggtgttaaagtgtgagggaagatgatttaccacagaaagagaccca 594
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatggaactagagtggtgttaaagtgtgagggaagatgatttaccacagaaagagaccca 794
Query: 595 ctgaacggacggcgagggctaaaggagggcatggaggagagaggtgagtactacaacgta 654
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctgaaaggacggcgagggctaaaggagggcatggaggagagaggtgagtactacaacgta 854
Query: 655 atgatgtatatagagg 670
||||||||||||||||
Sbjct: 855 atgatgtatatagagg 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_b01.g1 MSMg01no533_b01.g1 CHROMAT_FILE:
MSMg01no533_b01.g1 PHD_FILE: MSMg01no533_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:11 2005
(470 letters)
>mm_chr13_91525257_91526125
Length = 869
Score = 835 bits (432), Expect = 0.0
Identities = 459/470 (97%), Gaps = 5/470 (1%)
Strand = Plus / Minus
Query: 1 acttacaatgggacagagctaagtacattttacttgggtttataatgtgtataggtgtgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acttacaatgggacagagctaagtacattttacttgggtttataatgtgtataggtgtg- 449
Query: 61 tttttttggtttgtttttctttaaacaaaaaccctctaggagaaacaagccaaacaatat 120
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttttttggtttttttttttttaaacaaaaaccctctaggagaaacaagccaaacaatat 389
Query: 121 agagccaaggacagaaagaagaacaggactaagagaaggggaaaaaggccaaaacatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agagccaaggacagaaagaagaacaggactaagagaaggggaaaaaggccaaaacatttt 329
Query: 181 gcccctgttctgttgctgaccgtgctgcttggatatgttgggtatgtctcactgagaatg 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcccctgttccgttgctgaccgtgctgcttggatatgttgggtatgtctcactgagaatg 269
Query: 241 tatctatgcatcatgtgagaagtaagcttattcttcctacaggaaattaaggaagttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatctatgcatcatgtgagaagtaagcttattcttcctacaggaaattaaggaagttttt 209
Query: 301 ggttttggtttttttttttttttttttttgctggtgttgtttggttttatttttaagata 360
|||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 208 ggttttgggtttttttttttttttg----gctgttgttgtttggttttatttttaagata 153
Query: 361 tataaccatactgggcagggtttgttagaagctcactactagaaatatagtcctgaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tataaccatactgggcagggtttgttagaagctcactactagaaatatagtcctgaagct 93
Query: 421 tattacagatacagtagtgtttgtagcccgtcctggggaccttaacagca 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tattacagatacagtagtgtttgtagcccgtcctggggaccttaacagca 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space: 395140
Effective search space used: 395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
