BAC Information

Click to search

BAC

Clone NameMSMg01-533E14
Chromosome13 (Build37)
Map Location 34,468,383 - 34,468,961
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
Downstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533E14.T7 (MSMg01no533_e14.b1)MSMg01-533E14.TJ (MSMg01no533_e14.g1)
ACCAG601245AG601246
length729739
length of high quality
(start - end)
579 (80 - 658)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no533_e14.b1 PHD_FILE: MSMg01no533_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:27 2005CHROMAT_FILE: MSMg01no533_e14.g1 PHD_FILE: MSMg01no533_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCTTTGAGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCACAGCATATCTGAAGGCTTGCAAGCACCAGCTTTTG
GGAGCAGCCTATTGGATCCCACTCCTCCAGAATTATCAGCAGAAGGCTCT
TCCCATGAAGCCACCATCCTTTTGTAAAAGCATCATCAACAATCTAGAAA
CTACTTCCTGCCCTTTGGTTATTCCAGGGCTGTGTGCTTTGGGTGGGAGA
TGCTCTTGCCTTAACTATTGTTCAGTGCTTTCCTGGATACTGAGGACATC
TCTGCCCCCTCATAAGGGATATGACACTCTAGTCCTTGCCTCAACTCCAA
ACTACTTGAAAATGATACTCTTACAGAGCATGGAATGACCCCATGCCATT
TTAATTTGAAGAGCAAAAGGCTTGTCTGTCCAAAGATATTTTCCCACCCT
TAAAACTGATGTTTTAAACTCCGTGCAATTAAAAGTCACTTGTTAACCTG
TGTAGTTGTTAGAATATAAAGTTGTGGCTGTGAGGGGAATCCCTGAAAGC
AAGGATAGTTATTTGGGGAGCTTTTAATAAATACTGATGTAAAATGCAGA
CCAGCCAAACAGATCTCTGGGGGGATGGGGGAGAGGAGAAGATGGCAAGA
GGTTTCTAGCTCCAAAAGACAGTGAGGATTCACAACACTTGCCTTAAGAA
ACTGAGAAAGCCATTCAGTCCTTCTGTTT
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGATACAAGACATTTTTGGCTGACT
TCAGATGGTAAATATTTGCTATGATGTAGTAAACAGAGTAGTCCTTAACA
GGTGCTGTGGTTTAAATATGAAATGTTCTCACAGGCTCATGGGTTGGAAT
ATTTAGTCCCTCGTGGATAATGCCATTTGGGTGGGTTGTAGGACCAGGGT
GCTCAGGAGGAGGTGGAGTCTCACTGAAGGGAGTGGGTTAACTATGGGAA
AACCAGAGGGAGAGATAGACCCCCTTCCTGCCTACTCTCTGCTTCTTGTT
CTGTATGGATGAAAGGAGAAGAACTCCCAGCTGCACACTCCCAACACTGT
GGAGCCACCTGCCACCAAGTCTCCTTCTCTGTGATGGACTGTAGCTCCTA
AAACTGTGAGCCAAAATGAAGCCACTCCTCTCTAGGTTGTTCTTTTTGTT
TTTTGGACAGGTACATTAGTGACTTTTCTCATTGCTGTGATCAAATAAAT
ACCTGACAGGAAGCAACTTAAGGGAGGAAAGCAGGGTACAGGTGGCTCTA
TGGTTGGGGGAGTGTGCAGCGTGACTTCTCACATCCTCATTCTCCTCACC
TAGTAGAATAGAAAATAGAAAGGATAGAAAGTAAGGACATATTTGTAAAA
CCTCACAGTGAGCCTCCAGTCATCCATTTCCCTCCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_e14.b1 MSMg01no533_e14.b1 CHROMAT_FILE:
MSMg01no533_e14.b1 PHD_FILE: MSMg01no533_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:27 2005
         (579 letters)



>mm_chr13_34468183_34469161
          Length = 979

 Score = 1120 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttgcaagcaccagcttttgggagcagcctattggatcccactcctccagaattatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttgcaagcaccagcttttgggagcagcctattggatcccactcctccagaattatcag 260

                                                                       
Query: 61  cagaaggctcttcccatgaagccaccatccttttgtaaaagcatcatcaacaatctagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaggctcttcccatgaagccaccatccttttgtaaaagcatcatcaacaatctagaa 320

                                                                       
Query: 121 actacttcctgccctttggttattccagggctgtgtgctttgggtgggagatgctcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actacttcctgccctttggttattccagggctgtgtgctttgggtgggagatgctcttgc 380

                                                                       
Query: 181 cttaactattgttcagtgctttcctggatactgaggacatctctgccccctcataaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaactattgttcagtgctttcctggatactgaggacatctctgccccctcataaggga 440

                                                                       
Query: 241 tatgacactctagtccttgcctcaactccaaactacttgaaaatgatactcttacagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgacactctagtccttgcctcaactccaaactacttgaaaatgatactcttacagagc 500

                                                                       
Query: 301 atggaatgaccccatgccattttaatttgaagagcaaaaggcttgtctgtccaaagatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggaatgaccccatgccattttaatttgaagagcaaaaggcttgtctgtccaaagatat 560

                                                                       
Query: 361 tttcccacccttaaaactgatgttttaaactccgtgcaattaaaagtcacttgttaacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcccacccttaaaactgatgttttaaactccgtgcaattaaaagtcacttgttaacct 620

                                                                       
Query: 421 gtgtagttgttagaatataaagttgtggctgtgaggggaatccctgaaagcaaggatagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtagttgttagaatataaagttgtggctgtgaggggaatccctgaaagcaaggatagt 680

                                                                       
Query: 481 tatttggggagcttttaataaatactgatgtaaaatgcagaccagccaaacagatctctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttggggagcttttaataaatactgatgtaaaatgcagaccagccaaacagatctctg 740

                                                  
Query: 541 gggggatgggggagaggagaagatggcaagaggtttcta 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggggatgggggagaggagaagatggcaagaggtttcta 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)