BAC Information

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BAC

Clone NameMSMg01-533G03
Chromosome13 (Build37)
Map Location 37,563,073 - 37,563,304
singlet/doubletsinglet
Overlap genenone
Upstream geneFars2, LOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
Downstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533G03.T7 (MSMg01no533_g03.b1)MSMg01-533G03.TJ (MSMg01no533_g03.g1)
ACCAG601318AG601319
length736760
length of high quality
(start - end)
436 (56 - 491)234 (70 - 303)
definitionCHROMAT_FILE: MSMg01no533_g03.b1 PHD_FILE: MSMg01no533_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:35 2005CHROMAT_FILE: MSMg01no533_g03.g1 PHD_FILE: MSMg01no533_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGCCAGTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTATACTGCGTTATTCTTTAATCTTTAACCACTT
CAGGGTCGTAGTAATTTTTATTTTCTCAGATGTTAACTGTCTCGGAGGCT
TGCTGCCTCAGTCTGCTAACCTAGGTCTAATCTTGAAAGCATCTAGCCTC
CCTACAACCTAATCCACCTCTGAGACTTACCGCTGAAAAAGCTCACCCCT
TCCTAGCTCTTTCTGAACTCTGGCTGGCTGATCAACTCTGCTGTTCTGCT
CAAAACTCCTCTCTAATCTGACTGATTCTAACTGGCTTCTTTCGGCTTTT
GACTGAATTGTTCTGTTTGGGTTCATACTAACTACCTAACTAACTTTTGC
CTATCAGTTCTAATCTGACTCCTCATTCCCTGGCTCATCCTGTCCTCACT
TGTGTCTAGCTTGTTCTCTCTTTGCAATCTGTCTCTGAACAACTATCCTA
GTAAAACTGTCCCCCTTCCCTTGTTGCTCTCTCTTATGCAGCTTTTCTTT
TCTCCCTGTCCGCATGATACTTTGTCATGTACTATTCTCGTTTATTCTTT
CCCCGACACCATTACTCTTTCCTGCTCCCTCAACTAAATTGCCACTTTTC
ACATGTGTTTGTTTCCCCTCTACTTTTTTATTTTTTATCCCCTCCTGCTT
GCGCATTTAAAGGTTGTTTATTTTAAGGGTGTTATG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGCGAAATTCACTTTGTAGACCAGGCTGGCCTTGAAC
TCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGT
GCCACCACTGCCCAGCTCTACAGAAGTTTCTAATTCCACAACAACTTGGG
GGGGGGGGATACTCTTTAAGGGGACACAGGAGAAAAACAACACCATTGAT
TCTTGTCAACTTAAGATATCGCTTCCTCTTATTGCAAGGTATTTTCCATT
GACAGAGAAGAATAACATTTATTAGGACATTTAGAAGACTATTGGGGGGG
GGTCCTCTCCTATATGGGCAAGAAACACATTCTTATAACAAGATGCTCCC
TTCCGACACCTCATGCTCAGCTCAAGATACTTGTATGCCCACACCTATCT
GGTTGTTTCCTGACTCTTGGTGCCCTGTTTCTTGTCTGTGGGAAGATGTA
TTTATTCAGCTTTCCTATACTGTCACAAACACTCTTAGACAGTCCTATTA
TTAAGAGAACATGTTTATTTTGGGTTCCTGCTCTTGGAGCTTTTATCCCT
TTGATTCGCTTGTTGAGTCTTTTTTTAACTCTATGCATGACCGGTTTGCT
TCTTTATGCTGCCTCTTCCTGTTATCCACCCCTGAATACTTGTTCCGATC
TAATTTGTTTCCGCCCTATTCTCACCTTTTGCCACCGTCCCTTTTTCGCC
TCTCGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_g03.g1 MSMg01no533_g03.g1 CHROMAT_FILE:
MSMg01no533_g03.g1 PHD_FILE: MSMg01no533_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:35 2005
         (234 letters)



>mm_chr13_37562873_37563504
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 232/234 (99%), Gaps = 2/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactttgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactttgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccaa 260

                                                                       
Query: 61  gtgctgggattaaaggtgtgtgccaccactgcccagctctacagaagtttctaattccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgggattaaaggtgtgtgccaccactgcccagctctacagaagtttctaattccac 320

                                                                       
Query: 121 aacaacttgggggggggggatactctttaaggggacacaggagaaaaacaacaccattga 180
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaacttggggggggg--atactctttaaggggacacaggagaaaaacaacaccattga 378

                                                                 
Query: 181 ttcttgtcaacttaagatatcgcttcctcttattgcaaggtattttccattgac 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcttgtcaacttaagatatcgcttcctcttattgcaaggtattttccattgac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space:   140175
Effective search space used:   140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)