BAC Information

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BAC

Clone NameMSMg01-533G09
Chromosome13 (Build37)
Map Location 90,242,649 - 90,242,868
singlet/doubletsinglet
Overlap geneTmem167
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533G09.T7 (MSMg01no533_g09.b1)MSMg01-533G09.TJ (MSMg01no533_g09.g1)
ACCAG601330AG601331
length758750
length of high quality
(start - end)
221 (78 - 298)607 (144 - 750)
definitionCHROMAT_FILE: MSMg01no533_g09.b1 PHD_FILE: MSMg01no533_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:36 2005CHROMAT_FILE: MSMg01no533_g09.g1 PHD_FILE: MSMg01no533_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCACTTTTTTTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAACTCATTTTAATTGTTGTTTCTTTAGCAACTG
TAAGCTGTACTAAATTCAAGGGTACCAGGCATAAGAAAGAAAGAAAGGAG
TCACATACAAACAGCTGTGGAACATCTGGATCCTTTGTAAGCCTACAAGA
GATGGCTCTGACTTACTCTCACTTCAGTTCTCCCATGCTGTCTAAATTTC
ATTTCCCTGTAACCAAACTTTTTATTTCACATTAGATGTTCATTTACCTG
GCTTGCCAACTTGGAAATGTCAACCTTGACTTCTCTCATCAACTAAAATT
CTCAAACTCATTTTATGTTAAGAGCTTCTCCACTGAGCCTGCATTGATAT
ATTACCATATTTATATATTTGTGTCCGACTAATGTCAAAATTATTAGAAT
ATCTCTTATATTAATTAAGCCTACAGATATTCATGTACGTCATTGATCAC
TGTCCACAGGTCCTTCCTCCACATTATCATCCTATCAGTGTGGTTTTACT
ATATTTGACACTTCGCCCTTCATATTCCAACCAAAATCATACTATTTTTT
TGTCCTACACCATCACAACTTCCCCTTTCCTATTCCTTTCCTCAAATTTT
CCTATTCTCTCCACTCTAATTTTTACCTCACTTCTGTTTTTTCTTTGATT
TTATACCATTCCTTCTTATCCCCCATTTTTTATTTTTTATATTCACCCAT
CTTTTTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACCTTTTCCTCATAACTCATAT
ATGCTCATTCTAACTCGTAAGACCCGTTAAGAGTCGCGATTACACAAGCC
AATCCACTAGCCTCCTCTCTGACCTGATGCTTTCTTTTCAGGATGCTCAA
TGATCTCAAGAACTTCTTCATCAAATGCAGAAGTGTTACAGTTCTCTTGA
CACCTTGTGACAAATCATTTGACCCTGCCCTTCCTGTTCTACTTTCACCC
CACTGCCCTCTGCTGGTAGAATTAATCTGCAAGGGTTAAAAATTTAACAC
CATTAGCAAACACATATCACTCATCTCTCAGAATTGGAGCCCTTCAAATA
TGTTCATGTAATGGTTGATACTTTTTCTAATATGATTGTGGTTTCGACTT
ACAAGGGTGACACCACTTTAGATGTTAGTAATCATTTAGCATCCACCTTC
TCCTTTCTAGGACTCTGGCTACAACTAAAACCTAATAATAGTCCTGCTTA
TTCTAACAAACGCCATAACGGATTTCTCAATTTAGGAAATATTAACCATG
TTACTGGAATTCTTTATAATTCATATGGTCAAGAAATTATGGAATGACAC
CATCCCATATTTAAAGATAAAGAGAAGCATGTAATCCCACTTAAATACCA
GTATACTGTGGTACATTTAGCCACACTTATGTAAATTGAATTCACTTTAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_g09.b1 MSMg01no533_g09.b1 CHROMAT_FILE:
MSMg01no533_g09.b1 PHD_FILE: MSMg01no533_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:36 2005
         (221 letters)



>mm_chr13_90242449_90243068
          Length = 620

 Score =  391 bits (202), Expect = e-113
 Identities = 217/222 (97%), Gaps = 3/222 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgttgtttctttagcaactgtaagctgtactaaatt-caagggtaccaggcataaga 59
           ||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 420 aattgttgtttctttagtaactgtaagctgtact-aattccaagggtaccaggcataaga 362

                                                                       
Query: 60  aagaaagaaaggagtcacatacaaacagctgtggaacatctggatcctttgtaagcctac 119
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaaag-aaggagtcacatacaaacagctgtggaacatctggatcctttgtaagcctac 303

                                                                       
Query: 120 aagagatggctctgacttactctcacttcagttctcccatgctgtctaaatttcatttcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagagatggctctgacttactctcacttcagttctcccatgctgtctaaatttcatttcc 243

                                                     
Query: 180 ctgtaaccaaactttttatttcacattagatgttcatttacc 221
           |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 242 ctgtaaccaagctttttatttcacattagatgttcatttacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 620
Length adjustment: 9
Effective length of query: 212
Effective length of database: 611
Effective search space:   129532
Effective search space used:   129532
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)