Query= MSMg01no533_n13.b1 MSMg01no533_n13.b1 CHROMAT_FILE:
MSMg01no533_n13.b1 PHD_FILE: MSMg01no533_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:09 2005
(594 letters)
>mm_chr13_19569039_19570032
Length = 994
Score = 746 bits (386), Expect = 0.0
Identities = 413/422 (97%), Gaps = 4/422 (0%)
Strand = Plus / Minus
Query: 176 aaaaacaaaaaccaaaatgtggtggcgcacgcctttaatcctagcactcgggaggcagag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 aaaaacaaaaaccaaaatgtggtggcgcacgcctttaatcctagcactcgggaggcagag 935
Query: 236 acaggcggatttctgagtttgaggccagcctggtctacaaagtgagttccaggacagcca 295
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 934 acgggcggatttctgagtttgaggccagcttggtctacaaagtgagttccaggacagcca 875
Query: 296 gggctatacagagaaaccctgtctcaaaaaacaaacaaac-aaac-aaac-aaacaaaaa 352
||||||||||||||||||||||||||||||||||| |||| |||| |||| ||| |||||
Sbjct: 874 gggctatacagagaaaccctgtctcaaaaaacaaa-aaacaaaacaaaacaaaaaaaaaa 816
Query: 353 aaaacagaaacaaaaacaaaatgactagataggaaagggtccccagaagtcccataatta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaaacagaaacaaaaacaaaatgactagataggaaagggtccccagaagtcccataatta 756
Query: 413 ttgacaaaggatggttgctgaagaagagagagccactctccactgagggcatcctgggaa 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttgacaaaggatggttgctgaaaaagagagagccactctccactgagggcatcctgggaa 696
Query: 473 ctcatttctgtacttcagtgggctaattagactcaggattatcaataaaactaaaattgg 532
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctcatttttgtacttcagtgggctaattagactcaggattatcaataaaactaaaattgg 636
Query: 533 cagacatgaattttggagtgagggcatgtggaggacactatggggagatattggatgtac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cagacatgaattttggagtgagggcatgtggaggacactatggggagatattggatgtac 576
Query: 593 at 594
||
Sbjct: 575 at 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_n13.g1 MSMg01no533_n13.g1 CHROMAT_FILE:
MSMg01no533_n13.g1 PHD_FILE: MSMg01no533_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:09 2005
(652 letters)
>mm_chr13_19375489_19376540
Length = 1052
Score = 1096 bits (567), Expect = 0.0
Identities = 637/679 (93%), Gaps = 32/679 (4%)
Strand = Plus / Plus
Query: 1 tatcggtgctgcagaattgtataattcccaaggattagatgaaatgagggcagggcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tatcggtgctgcagaattgtataattcccaaggattagatgaaatgagggcagggcacag 238
Query: 61 agccctttcctcactgaggaacacttggaaatcaatatgtgctgaaagagaagagtcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agccctttcctcactgaggaacacttggaaatcaatatgtgctgaaagagaagagtcatt 298
Query: 121 ttcttcttccacatattcct--------------tgtgtgtgtgtgtgtgtgtgtgc--- 163
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 299 ttcttcttccacatattccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcg 358
Query: 164 -----gcgtgcatgcgtgtgtgttgcactacctttactcattcatccaaatacagaatta 218
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgcgtgcgtgcgtgcgtgtgtgttgcactacctttactcattcatccaaatacagaatta 418
Query: 219 tgagcttttcacatcctctctctgggataaatgctcacaaaacatgagagagcacacatc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgagcttttcacatcctctctctgggataaatgctcacaaaacatgagagagcacacatc 478
Query: 279 ccttggcaaactcaaaagtcatttaattttctttggttttccacttgggaaattggcagt 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 479 ccttggcaaactcaaaagtcatttaattttctttggttttccacttgggaaattagcagc 538
Query: 339 gatgtctcttggcaggtctactcatgactgcatgaggtctctccactatgatttctataa 398
| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 539 ggtgtctcttggcaggtctactcctgactgcctgaggtctctccactatgatttctataa 598
Query: 399 gggcttcaccaattcctattaccaccaacagggcagaaagaaggcttcttttcacctcat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gggcttcaccaattcctattaccaccaacagggcagaaagaaggcttcttttcacctcat 658
Query: 459 ccttatcagccactattctctttgactgttagtaccttcctatccggagtggtgtgggca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ccttatcagccactattctctttgactgttagtaccttcctatccggagtggtgtgggca 718
Query: 519 gctttctaggatgtgggaggcatgttctacactgcttctcactgagagatcccagagccg 578
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 719 gctttctaggatgtgggaggcatgtcctacactgcttctcactgagagatcccagagcca 778
Query: 579 agacaatgaagatggaggcagaactcctgctccagatatctcattcttatttacttca-- 636
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 779 agacaatgaagatggaggcagaactcctgcttcagatatctcactct-----acttcact 833
Query: 637 ---ttttcaattcttcttt 652
||||||||||||||||
Sbjct: 834 ttgttttcaattcttcttt 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
